CV885198

Overview
NameCV885198
Unique NameCV885198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885198 vs. ExPASy Swiss-Prot
Match: LIGA_BOVIN (Ligatin OS=Bos taurus GN=LGTN PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.995e-33
Identity = 98/299 (32.78%), Postives = 160/299 (53.51%), Query Frame = -1
Query:   67 STLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLISVKEDKYKKESMLFSVNRGHPDYLSFK-PEKRPAEKASQAVDHAASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKDNLVKPTDKSIVVLDPTLCDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQ-AHHVVTRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPG-KKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTAR 954
            STL  +H+  C P G  LDIKKSS+KKL+K+LQ      +I V+E     ES++ +V+  HP   SF  PE  P    SQ +   + +  QP    ++  +Y     +  +F   G   G +   SE    V NY +K++LV   +K++V LDP LCD + +   K      T++    L    + ++Q A+ V   G + +V+KG +  I I   ++  NKK+T +  LE + +DP ++A+ LQ++   STTV   PG K   +V IQG  I  + + L+E++ +P+++I+ L+K  +
Sbjct:  285 STLLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQHMQQEQIIQVQELSKGVESIV-AVDWKHPRITSFVIPEPSPT---SQTIQEGSRE--QPYHPPDIKPLYCVPASMTLLFQESGHKKGSVLEGSEVRTFVINYAKKNDLVDADNKNLVKLDPILCDCILE---KDEQHTVTKLPWDSLLGRCLEKLQPAYQVTFPGQEPIVKKGRICPIDITLAQKASNKKVTVVRNLEAYGLDPRSVAATLQQRCQASTTVTSAPGLKDSVQVQIQGNQIHHLGRLLLEEYRLPRKHIQGLEKAPK 574          
BLAST of CV885198 vs. ExPASy Swiss-Prot
Match: LIGA_PONAB (Ligatin OS=Pongo abelii GN=LGTN PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.206e-32
Identity = 97/299 (32.44%), Postives = 158/299 (52.84%), Query Frame = -1
Query:   67 STLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLISVKEDKYKKESMLFSVNRGHPDYLSFK-PEKRPAEKASQAVDHAASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKDNLVKPTDKSIVVLDPTLCDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQ-AHHVVTRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQ-EVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTAR 954
            ST   +H+  C P G  LDIKKSS+KKL+K+LQ      +I VKE     ES++ +V+  HP   SF  PE  P    SQ +   + +  QP    ++  +Y     +  +F   G   G     SE   +V NY +K++LV   +K++V LDP LCD + +   K       ++    L +  + ++Q A+ V   G + +V+KG +  I I   +R  NKK+T +  LE + +DP ++A+ LQ++   STTV   PG K   +V IQG  +  +   L+E++ +P+++I+ L+K  +
Sbjct:  290 STFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIV-AVDWKHPRITSFVIPEPSPT---SQTIQEGSRE--QPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAKKNDLVDADNKNLVRLDPILCDCILE---KNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALK 579          
BLAST of CV885198 vs. ExPASy Swiss-Prot
Match: LIGA_HUMAN (Ligatin OS=Homo sapiens GN=LGTN PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 2.206e-32
Identity = 97/299 (32.44%), Postives = 158/299 (52.84%), Query Frame = -1
Query:   67 STLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLISVKEDKYKKESMLFSVNRGHPDYLSFK-PEKRPAEKASQAVDHAASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKDNLVKPTDKSIVVLDPTLCDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQ-AHHVVTRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQ-EVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTAR 954
            ST   +H+  C P G  LDIKKSS+KKL+K+LQ      +I VKE     ES++ +V+  HP   SF  PE  P    SQ +   + +  QP    ++  +Y     +  +F   G   G     SE   +V NY +K++LV   +K++V LDP LCD + +   K       ++    L +  + ++Q A+ V   G + +V+KG +  I I   +R  NKK+T +  LE + +DP ++A+ LQ++   STTV   PG K   +V IQG  +  +   L+E++ +P+++I+ L+K  +
Sbjct:  290 STFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIV-AVDWKHPRITSFVIPEPSPT---SQTIQEGSRE--QPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAKKNDLVDADNKNLVRLDPILCDCILE---KNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALK 579          
BLAST of CV885198 vs. ExPASy Swiss-Prot
Match: LIGA_RAT (Ligatin OS=Rattus norvegicus GN=Lgtn PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.064e-30
Identity = 94/299 (31.44%), Postives = 159/299 (53.18%), Query Frame = -1
Query:   67 STLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLISVKEDKYKKESMLFSVNRGHPDYLSF-KPEKRPAEKASQAVDHAASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKDNLVKPTDKSIVVLDPTLCDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQ-AHHVVTRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQ-EVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTAR 954
            STL  +H+  C P G  LDIKKSS+KKL+K+LQ      ++ VKE     ES++ +V+  HP   SF  PE      ASQ V   + +  +P    ++  +Y    ++  +F   G   G     SE   ++ +Y +++NLV   ++++V LDP LCD + +   K       ++    L +  +  +Q A+ V   G + +++KG L  I I    +  NKK+T +  LET+ +DP ++A+ LQ++   ST V+  PG K   +V +QG  I  + + L+E++ +P +YI+ L+K  +
Sbjct:  277 STLLGSHMFSCCPEGQQLDIKKSSYKKLSKFLQHMQQEQIVQVKELSKGVESIV-AVDWRHPRITSFIVPEP---SLASQTVQEGSRE--KPYLPPDIKSLYCVPANMTQLFLESGHKKGSTLEGSEVRRIITDYAKRNNLVDADNRNLVKLDPILCDCILE---KNEQHLVMKLPWDSLLTRCLKNLQPAYQVTFPGQEPIIKKGKLCPIDITLVLKTYNKKVTVVRNLETYGLDPCSVAAILQQRCQASTIVSPAPGAKDSLQVQVQGNQIHHLGQLLLEEYRLPGKYIQGLEKAPK 566          
BLAST of CV885198 vs. ExPASy Swiss-Prot
Match: LIGA_MOUSE (Ligatin OS=Mus musculus GN=Lgtn PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 2.064e-30
Identity = 94/299 (31.44%), Postives = 156/299 (52.17%), Query Frame = -1
Query:   67 STLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLISVKEDKYKKESMLFSVNRGHPDYLSFK-PEKRPAEKASQAVDHAASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKDNLVKPTDKSIVVLDPTLCDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQ-AHHVVTRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQ-EVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTAR 954
            STL  +H+  C P G  LDIKKSS+KKL+K+LQ      ++ VKE     ES++ +V+  HP   SF  PE     +  Q V        QP    ++  +Y    ++  +F   G   G     SE   ++ +Y +++ LV   ++++V LDP LCD + +   K      T++    L +  +  MQ A+ V   G + +++KG L  I I    +  NKK+T +  LET+ +DP ++A+ LQ++   ST V+  PG K   +V +QG  I  + + L+E++ +P +YI+ L+K  +
Sbjct:  277 STLLGSHMFSCCPEGQQLDIKKSSYKKLSKFLQHMQQEQIVQVKELSKGVESIV-AVDWRHPRITSFVIPEPSLTSQTVQEVSRE-----QPYLPPDIKSLYCVPANMTQLFLESGHKKGSTLEGSEVRKIITDYAKRNRLVDADNRNLVKLDPILCDCILE---KNEQHLVTKLPWDCLLTRCLKNMQPAYQVTFPGQEPILKKGKLCPIDITLALKTYNKKVTVVRNLETYGLDPCSVAAILQQRCQASTIVSPAPGAKDSLQVQVQGNQIHHLGQLLLEEYRLPGKYIQGLEKAPK 566          
BLAST of CV885198 vs. ExPASy Swiss-Prot
Match: TMA64_YEAST (Translation machinery-associated protein 64 OS=Saccharomyces cerevisiae GN=TMA64 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.652e-19
Identity = 80/305 (26.23%), Postives = 139/305 (45.57%), Query Frame = -1
Query:   64 STLWSNHILPCRP--SGITLDIKKSSHKKLTKWLQAKSSAGLISVKEDKYKKESMLFSVNRGHPDYLSFKPEKRPAEKASQAVDHAASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKDNLVKPTDKSIVVLDPTLCDALFKGAIKKGTTYPTEIHKKD--LGSTFVNRMQAHHVVTRGSQSVV----RKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTARK 954
            S   SNHI+   P      +++KK+S KK  K+L+     G + +K      +  +   N    +  +F P K    K++     + +   + + ++    +YKP      +   V   +   YT  +    V  YI   NL    DK  V++D  L D + K   KK     + I  +   L     N     + + +   +++     KG+L  I+I+TE + G K +T++S  E F +DPE+LA++L+K  + STT++E    K  EV +QG     +  HL  + GIP ++I+  +K  +K
Sbjct:  264 SNFISNHIMRNLPPIDHNEVNVKKTSWKKSAKFLKHFEKEGFLKLKGKG--DDLTIVGKNTDKDELKNFVPYKLGCSKSATESRESTTSKEKTSGMMYSLTLYKPFNLAKDLLKEVNLASHTYYTSQDIRSAVSQYISVKNLADTKDKGKVIMDDLLFDMVNK---KKKVLNASRIIARGEILHPLLTNNFTEFYQIFKSDDTLLFKAPMKGSLPHIKIITEMKIGRKVITRVSNFEVFQVDPESLAADLRKICSGSTTISESQTFKCAEVQVQGPHGQSIIDHL-NKLGIPSKWIDFENKLKKK 562          
The following BLAST results are available for this feature:
BLAST of CV885198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LIGA_BOVIN1.995e-3332.78Ligatin OS=Bos taurus GN=LGTN PE=2 SV=1[more]
LIGA_PONAB2.206e-3232.44Ligatin OS=Pongo abelii GN=LGTN PE=2 SV=1[more]
LIGA_HUMAN2.206e-3232.44Ligatin OS=Homo sapiens GN=LGTN PE=1 SV=3[more]
LIGA_RAT2.064e-3031.44Ligatin OS=Rattus norvegicus GN=Lgtn PE=2 SV=1[more]
LIGA_MOUSE2.064e-3031.44Ligatin OS=Mus musculus GN=Lgtn PE=2 SV=3[more]
TMA64_YEAST3.652e-1926.23Translation machinery-associated protein 64 OS=Sac... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013C03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885198 ID=CV885198; Name=CV885198; organism=Citrus sinensis; type=EST; length=954bp
TCAATAAGAGGCACACCATAAGAGTTAAATTGCATTACACACCAGCCATT
TCTCACCTTCTCATTTTCTGGCGGTTTTATCAAGAACCTCAATATATCTC
TTTGGAATCCCAAATTGTTCAACAAGATGTTTCGCCACATCTGCAATCAC
TCCACCTTGAATAAGAACCTCCTGTCCTTTCTTGCCCGGTAGTTCTGCAA
CTGTTGTACTGCAAGCAAATTTTTTCTGCAACTCTGATGCTAGTGCTTCA
GGATCCATCAAGAATGTTTCCAAACCTGACAGTTTTGTCATTTTTTTGTT
TCCTTGTCGCCGCTCTGTTACTATCTGAATTGTCTTCAAAGCACCTTTAC
GAACAACTGACTGACTTCCTCTGGTCACAACATGATGGGCCTGCATCCGA
TTTACAAATGTTGATCCTAAATCTTTCTTATGTATCTCAGTTGGATATGT
TGTTCCTTTTTTTATGGCTCCCTTGAACAATGCATCACATAGTGTTGGAT
CCAAAACTACAATGGATTTGTCAGTTGGCTTAACCAGATTGTCTTTCTCA
ATGTAATTGAAGACAACATCACAGGCTTCAGAAAAAGTGTAAAGTCTGCC
CGTATCAGCACCAACAGAGGCAAAAATGGGATTGACATGCACACTTGGTT
TATAAACCTCTGTGACTTCGAGGATTTTTGCCGGCTGAATATTGTCACTA
GCAGCATGATCAACAGCTTGACTGGCTTTCTCTGCTGGTCGTTTCTCAGG
CTTGAAGGATAAGTAGTCTGGATGACCACGATTAACAGAAAATAACATCG
ATTCCTTCTTGTATTTATCTTCTTTCACTGAAATCAGTCCTGCAGATGAT
TTAGCCTGTAACCACTTAGTTAATTTCTTGTGAGACGATTTCTTGATATC
CAGTGTGATACCAGAAGGCCTACAAGGTAATATATGATTTGACCACAATG
TGCT
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