CV885197

Overview
NameCV885197
Unique NameCV885197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885197_ssr112 microsatellite CV885197_ssr112:112..131. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3396 contig Csv1_Contig3396:1..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: LIGA_RAT (Ligatin OS=Rattus norvegicus GN=Lgtn PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.428e-28
Identity = 78/221 (35.29%), Postives = 113/221 (51.13%), Query Frame = 3
Query:  144 MFKKAVEAKSHQRLSGAXXXXXXXXXXXXFPRASDADIDALLPPKTEITVSKFQ----NRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAAD 794
            MF KA   KS+  + G+            FP      +  L+P K E+ V K      + V VY+  GG P+ F+++    +++PTV+ LW  P+LLP F+     + + V GGADLM PG+ +P  GLP    G+  A+ + GN AP+AVG   MS+ + L +GL+GK + + H Y+D LW S +  S P    L      DP        +DSCE  AD
Sbjct:    1 MFAKAFRVKSNTAIKGSDRRKLRADVTVAFPTLGTDQVSELIPGKEELNVVKLYAHKGDAVTVYT-SGGNPILFELE---KNLYPTVYTLWSHPDLLPAFITWPLVLEKLV-GGADLMLPGVVVPPTGLPQVQQGDLCAIALVGNRAPVAVGVAAMSTAQMLASGLKGKGISVLHTYQDHLWRSGDKSSPPAIAPL------DP--------TDSCEEKAD 202          
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: LIGA_MOUSE (Ligatin OS=Mus musculus GN=Lgtn PE=2 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 4.896e-27
Identity = 68/191 (35.60%), Postives = 103/191 (53.93%), Query Frame = 3
Query:  144 MFKKAVEAKSHQRLSGAXXXXXXXXXXXXFPRASDADIDALLPPKTEITVSKFQ----NRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVP 704
            MF KA   KS+  + G+            FP      I  L+P K E+ V K      + V VY+  GG P+ F+++    +++PTV+ LW  P++LP F+     + + V GGADLM PG+ +P  GLP    G+  A+ + GN AP+A+G   MS+ + L +GL+GK + + H Y+D LW S +  S P
Sbjct:    1 MFAKAFRVKSNTAIKGSDRRKLRADVTAAFPALGTDQISELIPGKEELNVVKLYVHKGDSVTVYT-SGGNPILFELE---KNLYPTVYTLWAYPDILPTFITWPLVLEKLV-GGADLMLPGVVVPPTGLPQVQQGDLCAIALVGNRAPVAIGVAAMSTAQMLASGLKGKGVSVLHTYQDHLWRSGDKSSPP 186          
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: LIGA_BOVIN (Ligatin OS=Bos taurus GN=LGTN PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.352e-27
Identity = 70/192 (36.46%), Postives = 102/192 (53.12%), Query Frame = 3
Query:  144 MFKKAVEAKSHQRLSGAXXXXXXXXXXXXFPRASDADIDALLPPKTEITVSKFQ----NRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPN 707
            MF KA   KS+  + G+            FP      +  L+P K E+ + K      + V VY V GG P+ F+++    +++PTV+ LW  P+LLP F      + + V GGADLM PG+ +P  GLP    G+  AV + GN AP+AVG   MS+ E L +GL+G+   + H Y+D LW S +  S P+
Sbjct:    1 MFAKAFRVKSNTAIKGSDRRKLRADVAAVFPTLGTDQVSELVPGKEELNIVKLYAHRGDAVTVY-VSGGNPILFELE---KNLYPTVYTLWSYPDLLPTFTTWPLVLEKLV-GGADLMLPGLVVPPAGLPQVQKGDLCAVALVGNRAPVAVGVAAMSTAEMLASGLKGRGFCVLHSYQDHLWRSGDKSSPPS 187          
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: LIGA_PONAB (Ligatin OS=Pongo abelii GN=LGTN PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.861e-26
Identity = 68/192 (35.42%), Postives = 101/192 (52.60%), Query Frame = 3
Query:  144 MFKKAVEAKSHQRLSGAXXXXXXXXXXXXFPRASDADIDALLPPKTEITVSKFQ----NRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPN 707
            MF KA   KS+  + G+            FP      +  L+P K E+ + K      + V VY V GG P+ F+++    +++PTV+ LW  P+LLP F      + + V GGADLM PG+ +P  GLP    G+  A+ + GN AP+A+G   MS+ E L +GL+G+   + H Y+D LW S    S P+
Sbjct:    1 MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDAVTVY-VSGGNPILFELE---KNLYPTVYTLWSYPDLLPTFTTWPLVLEKLV-GGADLMLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPS 187          
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: LIGA_HUMAN (Ligatin OS=Homo sapiens GN=LGTN PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.861e-26
Identity = 68/192 (35.42%), Postives = 101/192 (52.60%), Query Frame = 3
Query:  144 MFKKAVEAKSHQRLSGAXXXXXXXXXXXXFPRASDADIDALLPPKTEITVSKFQ----NRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPN 707
            MF KA   KS+  + G+            FP      +  L+P K E+ + K      + V VY V GG P+ F+++    +++PTV+ LW  P+LLP F      + + V GGADLM PG+ +P  GLP    G+  A+ + GN AP+A+G   MS+ E L +GL+G+   + H Y+D LW S    S P+
Sbjct:    1 MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDAVTVY-VSGGNPILFELE---KNLYPTVYTLWSYPDLLPTFTTWPLVLEKLV-GGADLMLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPS 187          
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: TMA20_SCHPO (Translation machinery-associated protein 20 OS=Schizosaccharomyces pombe GN=tma20 PE=2 SV=5)

HSP 1 Score: 69.707 bits (169), Expect = 2.208e-11
Identity = 43/145 (29.66%), Postives = 76/145 (52.41%), Query Frame = 3
Query:  255 IDALLPPKTEITVSKFQNRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGLPSFLSGEPWA-VKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSV 686
            ID L+P K+++T  K ++R+ +Y++ G   +F   DG    I P++  + K P+      +  G + +F++ GA++M PG+      LP  +  + +  V   G  AP A+G T MS+ E +K   +G  +   HY  D LW ++
Sbjct:   40 IDELIPKKSQLTQIKCEDRLFLYTLNGEIILFQHFDG---PIIPSLRLVHKCPDAFTQVRVDRGAI-KFLLSGANIMIPGLVSKGGNLPDDIEKDQYVIVTAEGKEAPAAIGLTKMSAKE-MKETNKGIGIENVHYLGDNLWKTI 179          
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: TMA20_YEAST (Translation machinery-associated protein 20 OS=Saccharomyces cerevisiae GN=TMA20 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.919e-11
Identity = 51/188 (27.13%), Postives = 89/188 (47.34%), Query Frame = 3
Query:  144 MFKKAVEAKSHQR--LSGAXXXXXXXXXXXXFPRASDADIDALLPPKTEITVSKFQNRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGL---PSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWG-SVE 689
            MFKK      H R  +  +            +P+  D  ID L+P K++I + K ++++ +YSV+G    F   D    ++ P++  + K PE  P   +  G + +FV+ GA++M PG++     L   P +  G    +        +A+G   M  TE +K+  +G ++ + H+  D LW  SVE
Sbjct:    1 MFKKFTREDVHSRSKVKSSIQRTLKAKLVKQYPKIEDV-IDELIPKKSQIELIKCEDKIQLYSVDGEVLFFQKFD----ELIPSLKLVHKFPEAYPTVQVDRGAI-KFVLSGANIMCPGLTSAGADLPPAPGYEKGTIVVINAENKENALAIGE-LMMGTEEIKSVNKGHSIELIHHLGDPLWNFSVE 181          
The following BLAST results are available for this feature:
BLAST of CV885197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LIGA_RAT4.428e-2835.29Ligatin OS=Rattus norvegicus GN=Lgtn PE=2 SV=1[more]
LIGA_MOUSE4.896e-2735.60Ligatin OS=Mus musculus GN=Lgtn PE=2 SV=3[more]
LIGA_BOVIN8.352e-2736.46Ligatin OS=Bos taurus GN=LGTN PE=2 SV=1[more]
LIGA_PONAB1.861e-2635.42Ligatin OS=Pongo abelii GN=LGTN PE=2 SV=1[more]
LIGA_HUMAN1.861e-2635.42Ligatin OS=Homo sapiens GN=LGTN PE=1 SV=3[more]
TMA20_SCHPO2.208e-1129.66Translation machinery-associated protein 20 OS=Sch... [more]
TMA20_YEAST4.919e-1127.13Translation machinery-associated protein 20 OS=Sac... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_013C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885197 ID=CV885197; Name=CV885197; organism=Citrus sinensis; type=EST; length=820bp
GCCGCCATATAAACTCAATTTCCAGAACCTTCCAATAATCCCTACAAATC
CCAGAAAGCTTAATTCACTCAAACGCACCATCCTAATTTTCAACAACCAT
CAAGTTTTTCCTTAATTTAATTTAATTTAATTTAACAAGCAAAATGTTTA
AGAAAGCAGTGGAAGCAAAATCGCACCAAAGGCTTTCGGGCGCCGACCGG
AAGAAGCTCAAACGAACTCTCAGAGACAGGTTTCCTCGCGCTTCCGATGC
CGATATCGACGCCTTGCTTCCTCCCAAGACGGAGATTACAGTGTCGAAGT
TTCAGAACCGAGTCCTCGTTTACAGTGTTGAAGGAGGGTTTCCTGTATTT
TTTGACGTTGATGGACGGGGCACGGATATTTTCCCTACAGTTTTTGCACT
GTGGAAGGTCCCTGAGCTTCTGCCGTGTTTTTTGTTGAAGGGAGGTGAAG
TTTCTCGATTTGTCATTGGAGGGGCAGATTTGATGTTCCCTGGTATTAGC
ATACCTGCTGATGGTTTACCGTCATTTTTATCTGGGGAACCGTGGGCAGT
GAAAGTTCCTGGCAACCCAGCACCTATTGCCGTTGGTTCTACTACTATGA
GCAGCACTGAAGCTTTGAAAGCTGGTTTACGTGGCAAGGCTCTAAGGATA
ACTCACTATTATCGTGACTTATTATGGGGATCAGTTGAGGGTCATTCTGT
GCCAAATGCAGGATTTTTAGAAGATGTGGTAGTTGAGGATCCTGCTTTTT
TGTCAACATCCCAAGTTTCTGATTCGTGCGAAGGTGCTGCTGACAGTTCA
AATGATCAAAAGAATGGCGA
back to top