CV885189

Overview
NameCV885189
Unique NameCV885189
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3395 contig Csv1_Contig3395:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.554e-64
Identity = 128/219 (58.45%), Postives = 162/219 (73.97%), Query Frame = 2
Query:   95 MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNKP 751
            MAEE A+  L ++ E VLKKRK+ + LA  RK QLELG  G     KK KV DIKRPE F+ ++R +E+D+IRMKQR KR K      KS L+FIIRIQG +DMHPKTK+IL NL+L+ +F+GVF +A D + + L KV+PYVTYGYPN  +VK+LIYKKG   ++   +PLTDNNIIEQ LG++ I+ IED+V+EIA V  HF+EV+ FLGPL LNKP
Sbjct:    1 MAEEEAKG-LDYIPEIVLKKRKNRDELAFIRKKQLELGNSG----KKKKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKP 214          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.076e-54
Identity = 109/207 (52.66%), Postives = 146/207 (70.53%), Query Frame = 2
Query:  131 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNKP 751
            V E+VLKKRK  E  AL +K  +E  K    +KN +++    KR EQ+ K+Y ++E +LI +K+  K        P++KLLFIIRI+G + + PKTKKIL  LRLR+IF+GVF++ N   + +L++VEPYVTYG+PNL +VKELIYK+GY  ++ QRI LTDN+I+EQ LGK+GIIC ED++HEI  V PHFKE  NFL P  L  P
Sbjct:    8 VPESVLKKRKREEEWALEKKQNVEAAK----KKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAP 210          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.972e-54
Identity = 106/207 (51.21%), Postives = 146/207 (70.53%), Query Frame = 2
Query:  131 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNKP 751
            V E+VLKKRK  E  AL +K +LE  K  + +K K        R +Q+ K+Y+++E +LI++K+  K        P++KLLFIIRI+G + + PKTKKIL  LRLR+IF+GVF++ N   + +L++VEPYVTYGYPNL +VKELIYK+G+  ++ QR  LTDN+I++Q LGK+GIIC+ED++HEI  V PHFKE  NFL P  L  P
Sbjct:   10 VPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLI----FNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAP 212          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.519e-53
Identity = 106/207 (51.21%), Postives = 146/207 (70.53%), Query Frame = 2
Query:  131 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNKP 751
            V E+VLKK K  E  AL +K +    K    +K+ +++    KR EQ+ K+Y +++ +LIR+K+  K        P++KLLFIIRI+G + + PKTKKIL  LRLR+IF+GVF++ N   + +L++VEPYVTYGYPNL +VKELIYK+GY  ++ QRI LTDN+I++Q LGK+GIIC+ED++HEI  V PHFKE  NFL P  L  P
Sbjct:    8 VPESVLKKIKRQEEWALAKKDEAVAAK----KKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAP 210          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.042e-49
Identity = 101/207 (48.79%), Postives = 142/207 (68.60%), Query Frame = 2
Query:  131 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNKP 751
            V ET+LKKRKS E     R+A++E  K      NK+ +    KR E ++K+YRD E + IR+++  K+        ++KL+F+IRI+G + + PK +KIL  LRL +I +GVFVR      E+++ VEP+V YGYPNL +VKELIYK+GY  V++QR+ LTDN+IIE+ LGKYGIIC+ED++HEI  V P+FK+  NFL P  L+ P
Sbjct:   13 VPETLLKKRKSQEKARAERQAEIEKKKAA----NKEKRAVIFKRAETYVKEYRDVEREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFKLSNP 215          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.351e-48
Identity = 96/207 (46.38%), Postives = 138/207 (66.67%), Query Frame = 2
Query:  131 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNKP 751
            V ETVLK+RK   A A T+ AQ    K     KNK+ K +  KR E+++++YR+ + + +R+K+  +         + K+ F++RI+G + +HPK +K L  LRLR+I +GVFV+ N   L +L+ +EPYV +GYPN   + +L+YK+GYA VD  R+P+TDN I+EQ+LGK+ IIC+ED+ HEIA V PHFKE  NFL P  LN P
Sbjct:   10 VPETVLKRRKQ-RADARTKAAQ---HKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNP 212          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.466e-48
Identity = 95/207 (45.89%), Postives = 140/207 (67.63%), Query Frame = 2
Query:  131 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNKP 751
            V ET+LKKRK+ + +   ++A     K  + +K+K        R E+++K+YR+ E + IR+++  K +       + KL+F+IRI+G S M PK +K+L  LRL +I +GVFVR      E+L+ VEPY+ +GYPNLA+V++L+YK+GY  V++QRIPL+DN IIE+ LGKYGIIC+ED++HEI  V P FK+  NFL P  L+ P
Sbjct:   14 VPETLLKKRKNADQIRAAKEAAAAEKKAANAEKDKVI----FSRAEKYVKEYREAEREQIRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHEIYTVGPAFKQASNFLWPFKLSNP 216          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.557e-45
Identity = 103/217 (47.47%), Postives = 137/217 (63.13%), Query Frame = 2
Query:   95 MAEEA-AQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTL 742
            MAE+A   Q      E +LKKRK  E    TRK ++E       +  KK++ E  KR E FI  YR +E + IR+ +  K    +    ++KLLF+IRI G  +M PK +K+L  LRL RI + VFVR N  + ++L+ VEPYV YG PNL +V+ELIYK+G+  ++ QRI L+DN +IE+ LGKY +I IEDI+HEI NV  HFKEV  FL P TL
Sbjct:    1 MAEDAPVVQQTMLEPEVLLKKRKVNER---TRKERVEQA-IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTL 213          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RL7_DICDI (60S ribosomal protein L7 OS=Dictyostelium discoideum GN=rpl7 PE=1 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 5.916e-45
Identity = 90/209 (43.06%), Postives = 138/209 (66.03%), Query Frame = 2
Query:  131 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDI--KRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNKP 751
            V E++LKKR      A ++K  +++ K G  Q+ + S++  +  KR E+++ +Y   E + IR+ +  K S      P +K+ F+IRI+G + + PK +K+L  LRL ++ +GVFV+ N   + +L+ VEPYV YG+PNL ++KELIYK+G+  +D QRIPLT N+++E+ LGK+GIIC+EDI+HEI     HFK+V N L P  LN P
Sbjct:   12 VPESILKKR------ATSQKKAVDVAKLGRAQQLRNSRLNSVYFKRAEKYVSEYHKTEREAIRLNRIAKNSGTFYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDIIHEITTCGKHFKQVNNSLWPFKLNCP 214          
BLAST of CV885189 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.968e-41
Identity = 89/218 (40.83%), Postives = 134/218 (61.47%), Query Frame = 2
Query:   98 AEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVCPHFKEVINFLGPLTLNKP 751
            AEE  + P   V ET+ KKR++   L + R  +    K+      K  +    ++ + + K+YR      IRM +  +++       + KL F+IRI+G + + PK +K+L  LRLR+IF+G FV+ N   + +L+ VEPY+ +GYPNL +V ELIYK+GY  ++++RI LTDN +I ++LGKYGIIC+ED++HEI  V   FKE  NFL P  L+ P
Sbjct:    4 AEEKKKVPA--VPETLKKKRRNFAELKIKRLRK----KFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKLSSP 215          
The following BLAST results are available for this feature:
BLAST of CV885189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL71_ARATH2.554e-6458.4560S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL72_ARATH1.076e-5452.6660S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL74_ARATH6.972e-5451.2160S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL73_ARATH4.519e-5351.2160S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL7_NEUCR1.042e-4948.7960S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]
RL7_CAEEL3.351e-4846.3860S ribosomal protein L7 OS=Caenorhabditis elegans... [more]
RL7_YARLI7.466e-4845.8960S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7A_SCHPO1.557e-4547.4760S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL7_DICDI5.916e-4543.0660S ribosomal protein L7 OS=Dictyostelium discoide... [more]
RL7_MACFA3.968e-4140.8360S ribosomal protein L7 OS=Macaca fascicularis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885189 ID=CV885189; Name=CV885189; organism=Citrus sinensis; type=EST; length=752bp
CCGCCGCTGTCTTTTCCCTTCACTTGAGTTGCATTTTCTCATACAAATCC
TTCTCTCTTCTCTTCTTCTATTCTTTCTTTTCTCTGCAAGCGATATGGCG
GAAGAAGCGGCACAGCAACCGTTAGCTTTTGTGGCGGAAACGGTGCTGAA
GAAAAGAAAAAGCACCGAGGCTTTGGCGCTGACGAGGAAAGCCCAGTTGG
AATTGGGAAAGTATGGCCATGGACAGAAGAACAAGAAGAGCAAAGTTGAG
GATATCAAAAGACCCGAGCAATTTATCAAACAGTATAGGGACCAGGAATT
GGACCTTATCCGAATGAAACAAAGAGGGAAAAGGTCGAAAAAAGTGATCG
GGAAGCCAAAATCTAAGTTGCTTTTTATTATACGCATACAAGGCACAAGT
GATATGCACCCTAAGACTAAGAAGATTCTCTACAACCTTAGATTGAGGAG
AATTTTCAGTGGTGTCTTTGTCAGGGCTAATGATGGTATGTTAGAAGTGC
TGCAAAAGGTGGAGCCATATGTCACATATGGATATCCTAATCTTGCAAAT
GTGAAGGAGCTAATTTACAAGAAGGGTTATGCAACTGTAGATAGGCAAAG
AATTCCTCTCACAGACAATAACATTATTGAACAGACGTTGGGGAAATATG
GCATTATATGCATTGAGGATATAGTACATGAAATAGCCAATGTTTGTCCT
CATTTTAAAGAGGTCATCAACTTTCTGGGTCCTTTAACACTAAACAAGCC
TG
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