CV885188

Overview
NameCV885188
Unique NameCV885188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11162 contig Csv1_Contig11162:407..1285. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.551e-18
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  598 PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAND 828
            PPA+KA ++S+PVV I+     K   C VC   F+     REMPCKH++H  CILPWL+  NSCPLCR ELP +  D
Sbjct:   53 PPAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNAD 129          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.057e-18
Identity = 78/295 (26.44%), Postives = 120/295 (40.68%), Query Frame = 1
Query:  136 YWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQR-----------PSNERYPAAEMY------------------LEDTQNPETFPXXXXXXXXXXXXXXS----PFNPVIVLRGPQ----TPDSGGGNEGTAMERGNFELFYDD----ATGAGLRP---LPASMSDFLMGS-GFDRVLDQLTQLDFNGVTRFVN---PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGRNVGGGPDETLGLT 876
            Y+C+ C+  + I  R  D I CP C +GFIE++    R           P+++  P  E                     +D+    TFP                   P       R P+    T  + G +EG     G  +   +     AT   L P   L ++  D+  G+ G D ++ QL       + +F N   PPA K  I+++P V + E HV     C VCK+ + L    R++PC H++H  CI+PWL   +SCP+CR+ L       G+N    P    G++
Sbjct:   11 YFCHCCS--VEIVPRLPDYI-CPRCESGFIEELPEETRSTENGSAPSTAPTDQSRPPLEHVDQHLFTLPQGYGQFAFGIFDDSFEIPTFPPGAQADDGRDPESRRERDHPSRHRYGARQPRARLTTRRATGRHEGVPTLEGIIQQLVNGIITPATIPSLGPWGVLHSNPMDYAWGANGLDAIITQL-------LNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL------TGQNTATNPPGLTGVS 289          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.911e-18
Identity = 48/137 (35.04%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  484 GLRP---LPASMSDFLMGS-GFDRVLDQLTQLDFNGVTRFVN---PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGRNVGGGPDETLGL 873
            GL P   L ++  D+  G+ G D ++ QL       + +F N   PPA K  I+++P V + E HV     C VCKE + L    R++PC H++H  CI+PWL   +SCP+CR+ L       G+N    P    G+
Sbjct:  167 GLGPWGVLHSNPMDYAWGANGLDTIITQL-------LNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL------TGQNTATNPPGLTGV 290          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.911e-18
Identity = 55/158 (34.81%), Postives = 78/158 (49.37%), Query Frame = 1
Query:  388 RGPQTPDSGGGNEGTAMERGNFELFYDDATGAGLRPLPASMS--------DFLMG-SGFDRVLDQLT-QLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDR 831
            RG   PD     EG       F  F+ ++   G  P P S S        D+  G +G D ++ QL  QL+  G      PPA K  I S+P VT+ +  V     C VCKE + +  E R++PC H +H  CI+PWL + ++CP+CR+ L  E + R
Sbjct:  130 RGSSRPDRSPAIEGILQHI--FAGFFANSAIPG-SPHPFSWSGMLHSNPGDYAWGQTGLDAIVTQLLGQLENTGP-----PPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTR 279          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.033e-17
Identity = 70/276 (25.36%), Postives = 110/276 (39.86%), Query Frame = 1
Query:  136 YWCYRCNRII--RIQSRTEDAIVCPDCHTGFIEQIETIQ---------------RPSNERYPAAEMYLEDTQNPETFPXXXXXXXXXXXXXXSPFNPV--------------IVLRGPQ----TPDSGGGNEGTAMERGNFELFYDDA------TGAGLRP---LPASMSDFLMGS-GFDRVLDQLTQLDFNGVTRFVN---PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 819
            Y+C+ C   I  R+   T     CP C +GFIE++   +               RPS E   +A+  L       TF                P                     R P+    T  + G NEG     G  +   +        +  G+ P   L ++  D+  G+ G D ++ QL       + +F N   PPA    I+++P + I E HV     C VCKE + +    R++PC H++H +CI+PWL   ++CP+CR+ L  +
Sbjct:   11 YFCHSCTAEIIPRLPEYT-----CPRCDSGFIEELPETRNSENNSSNNSGTDQNRPSFENLESAQFTLPSGYGQVTFGIFNEGLDFPIFGTSGPVEEPRDGESRREHQSRQRYGARQPRARLSTRRAAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGANGLDTIITQL-------LNQFENTGPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQ 274          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.349e-17
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  556 LTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAND 828
            L  +DF    + + PPASK  +ES+P VT+          C VC   F+     R++PC+H++H  CILPWL   NSCPLCR ELP ++ D
Sbjct:   39 LGAVDFTEWDQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPD 129          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.762e-17
Identity = 54/158 (34.18%), Postives = 79/158 (50.00%), Query Frame = 1
Query:  388 RGPQTPDSGGGNEGTAMERGNFELFYDDATGAGLRPLPASMS--------DFLMG-SGFDRVLDQLT-QLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDR 831
            RG   PD     EG   +   F  F+ ++   G  P P S S        D+  G +G D ++ QL  QL+  G      PPA K  I S+P VT+ +  V     C VCKE + +  + R++PC H +H  CI+PWL + ++CP+CR+ L  E + R
Sbjct:  131 RGSTRPDRSPAIEGIIQQI--FAGFFANSAIPG-SPHPFSWSGMLHSNPGDYAWGQTGLDAIVTQLLGQLENTGP-----PPADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTR 280          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.762e-17
Identity = 72/277 (25.99%), Postives = 112/277 (40.43%), Query Frame = 1
Query:  136 YWCYRCNRII--RIQSRTEDAIVCPDCHTGFIEQI-ETIQ---------------RPSNERYPAAEMYLEDTQNPETFPXXXXXXXXXXXXXXSPFNPV--------------IVLRGPQ----TPDSGGGNEGTAMERGNFELFYDDA------TGAGLRP---LPASMSDFLMGS-GFDRVLDQLTQLDFNGVTRFVN---PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 819
            Y+C+ C   I  R+   T     CP C +GFIE++ ET +               RPS E   +A+  L       TF                P                     R P+    T  + G NEG     G  +   +        +  G+ P   L ++  D+  G+ G D ++ QL       + +F N   PPA    I+++P + I E HV     C VCKE + +    R++PC H++H +CI+PWL   ++CP+CR+ L  +
Sbjct:   11 YFCHSCTAEITPRLPEYT-----CPRCDSGFIEELPETSRNSENNSSNNSRTDQNRPSFENLESAQFTLPSGYGQVTFGIFNEGLDFPIFGTSGPVEETRDGESRREHQSRQRYGARQPRARLSTRRAAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGANGLDTIITQL-------LNQFENTGPPPADNEKIQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQ 275          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 1
Query:  556 LTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA 822
            L  LDF    + + PPA+K  +ES+P VT+          C VC   F+     R++PC+H++H  CILPWL   NSCPLCR ELP ++
Sbjct:   39 LGALDFTEWDQRLPPPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDS 127          
BLAST of CV885188 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17
Identity = 72/277 (25.99%), Postives = 111/277 (40.07%), Query Frame = 1
Query:  136 YWCYRCNRII--RIQSRTEDAIVCPDCHTGFIEQI-ETIQ---------------RPSNERYPAAEMYLEDTQNPETFPXXXXXXXXXXXXXXSPFNPV--------------IVLRGPQ----TPDSGGGNEGTAMERGNFELFYDDA------TGAGLRP---LPASMSDFLMGS-GFDRVLDQLTQLDFNGVTRFVN---PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 819
            Y+C+ C   I  R+   T     CP C +GFIE++ ET +               RPS E   +A+  L       TF                P                     R P+    T    G NEG     G  +   +        +  G+ P   L ++  D+  G+ G D ++ QL       + +F N   PPA    I+++P + I E HV     C VCKE + +    R++PC H++H +CI+PWL   ++CP+CR+ L  +
Sbjct:   11 YFCHSCTAEITPRLPEYT-----CPRCDSGFIEELPETSRNSESNSSNNSGTDQNRPSFENIESAQFTLPSGYGQVTFGIFNEGLDFPMFGTSGPVEETRDGESRREHQSRQRYGARQPRARMSTRRGAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGANGLDTIITQL-------LNQFENTGPPPADTDKIQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQ 275          
The following BLAST results are available for this feature:
BLAST of CV885188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RN181_DANRE3.551e-1851.95E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]
RN126_HUMAN6.057e-1826.44RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_MOUSE7.911e-1835.04RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
RN115_HUMAN7.911e-1834.81RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
RN126_XENTR1.033e-1725.36RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN181_XENLA1.349e-1742.86E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
RN115_MOUSE1.762e-1734.18RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
R126A_XENLA1.762e-1725.99RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
RN181_XENTR3.006e-1742.70E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
R126B_XENLA3.006e-1725.99RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885188 ID=CV885188; Name=CV885188; organism=Citrus sinensis; type=EST; length=878bp
TTAGGGTTTTTGAATTGCTGATTCTTTTGTTCAGTCTATAAAAATTGAAC
ATTAGATCTGAAGGGTTTATCATTTCTGAGTGAAAAATAGAAACTTTCTT
CTGTTCTTTAATCTATGTCTTCAATCGGATTGTCGTACTGGTGCTACCGC
TGCAACCGGATCATCCGGATTCAGTCCAGGACTGAAGACGCAATCGTTTG
CCCCGATTGCCATACCGGCTTCATCGAACAGATTGAAACCATTCAGCGAC
CTTCGAACGAGAGATATCCCGCCGCCGAAATGTACTTAGAAGACACCCAA
AACCCGGAGACATTCCCGACCACGAGGTTTGGTCGGACTCGGAGAAACGG
CGGAGACCGATCCCCTTTCAACCCTGTCATCGTCCTCCGTGGGCCCCAGA
CCCCTGATTCAGGCGGTGGAAATGAAGGAACTGCCATGGAGAGAGGAAAC
TTCGAGCTTTTTTATGACGACGCTACCGGGGCGGGTCTTAGGCCATTACC
CGCGAGCATGTCGGACTTTTTGATGGGTTCGGGTTTTGACCGGGTCCTCG
ACCAGTTAACACAGTTAGATTTTAACGGGGTGACGAGGTTCGTGAACCCT
CCGGCTTCAAAGGCTGCGATCGAGTCAATGCCGGTGGTCACAATTGCAGA
AAGCCACGTGGCGAAGGAATCGCACTGTGCCGTTTGTAAAGAGCCATTCC
AGCTCAATTCGGAGGCTCGTGAGATGCCGTGTAAGCACATTTATCATGGT
GAATGTATTCTCCCTTGGCTTTCGATGCGCAACTCGTGCCCATTGTGCCG
GCGCGAGTTGCCGAATGAAGCAAATGACAGAGGCAGAAATGTCGGAGGTG
GCCCCGATGAGACGCTGGGGTTAACAAT
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