CV885183

Overview
NameCV885183
Unique NameCV885183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885183 vs. ExPASy Swiss-Prot
Match: DNLZ_XENLA (DNL-type zinc finger protein OS=Xenopus laevis GN=dnlz PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 3
Query:  318 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE---PGSIEDFLAARGEEVKK 512
            +I+TCKVC TRS KT  + +Y KGVV+ RC GC N H+IAD+LGWF +     +IE+ LAA+GE+V++
Sbjct:   84 LIYTCKVCATRSSKTISKVAYHKGVVIVRCPGCENHHIIADNLGWFSDLEGRRNIEEILAAKGEQVQR 151          
BLAST of CV885183 vs. ExPASy Swiss-Prot
Match: DNLZ_MOUSE (DNL-type zinc finger protein OS=Mus musculus GN=Dnlz PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  318 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE---PGSIEDFLAARGEEVKKGSVD-TLNLTLE 545
            +++TCKVC TRS K   + +Y +GVV+  C GC N H+IAD+L WF +     +IE+ LAARGEEV++ S D  L L LE
Sbjct:   75 LVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLSWFSDLKGKRNIEEILAARGEEVRRVSGDGALELILE 154          
BLAST of CV885183 vs. ExPASy Swiss-Prot
Match: DNLZ_DANRE (DNL-type zinc finger protein OS=Danio rerio GN=dnlz PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  213 QHEAGNS------MPSKSNDSSAVKLSATSNLKTSARHDLA-----MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE---PGSIEDFLAARGEEVKK 512
            +HE  NS      + S     + + LS   +  T A   L      +++TCKVC TRS+K   + +Y KGVV+  C GC N H+IAD+L WF +     +IE+ LAA+GE V++
Sbjct:   37 RHEESNSAFTNSTLRSDVGHDTGLGLSFCRSFSTEAIGQLQSTHYHLVYTCKVCSTRSMKKISKLAYHKGVVIVTCPGCKNHHVIADNLKWFSDLEGKRNIEEILAAKGESVRR 150          
BLAST of CV885183 vs. ExPASy Swiss-Prot
Match: DNLZ_HUMAN (DNL-type zinc finger protein OS=Homo sapiens GN=DNLZ PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  318 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE---PGSIEDFLAARGEEVKK-GSVDTLNLTLE 545
            +++TCKVC TRS K   + +Y +GVV+  C GC N H+IAD+LGWF +     +IE+ L ARGE+V +      L L LE
Sbjct:   71 LVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLNGKRNIEEILTARGEQVHRVAGEGALELVLE 150          
BLAST of CV885183 vs. ExPASy Swiss-Prot
Match: YA72_SCHPO (Uncharacterized protein C24H6.02c OS=Schizosaccharomyces pombe GN=SPAC24H6.02c PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = 3
Query:  219 EAGNSMPSKSNDSSAVKLSATSNLKTSARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPG-SIEDFLAARGEEVKKGSVDTLN 533
            +  + +PS  +D+  ++   T N+           FTC VC TRS     +++Y  G V+ +C  C N HL+ADHL  F E   +IED LA +GE  KKG    +N
Sbjct:   55 DLASGVPSVKSDADQLQPKPTYNVS----------FTCTVCNTRSNHNFSKQAYHNGTVLVQCPKCKNRHLMADHLKIFSEERVTIEDILAKKGETFKKGYGQVIN 150          
The following BLAST results are available for this feature:
BLAST of CV885183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DNLZ_XENLA2.516e-1554.41DNL-type zinc finger protein OS=Xenopus laevis GN=... [more]
DNLZ_MOUSE2.782e-1450.00DNL-type zinc finger protein OS=Mus musculus GN=Dn... [more]
DNLZ_DANRE2.355e-1337.72DNL-type zinc finger protein OS=Danio rerio GN=dnl... [more]
DNLZ_HUMAN4.017e-1346.25DNL-type zinc finger protein OS=Homo sapiens GN=DN... [more]
YA72_SCHPO3.760e-1135.85Uncharacterized protein C24H6.02c OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885183 ID=CV885183; Name=CV885183; organism=Citrus sinensis; type=EST; length=698bp
CTGAGTGATCGTTAATGGCGGCGGCTAGGATGATGCAAATCAGACGACTA
ATCTCTCTCCTTTCTCGTAACCAGCCTCAAGCTTCTCTTCTCAAAGAACC
CACTAGGCAATTTCTACCTTCTACAAGTGCACATTTTGGCATAAGTGAAT
ACCACCGGAGAGGACTTCAAACATTGATAAATTCAAACAGTGTGACTGAT
GCGGATCAGGAACAGCATGAGGCTGGCAATTCGATGCCCTCTAAATCTAA
TGACAGTTCCGCTGTGAAGCTCAGTGCGACGTCCAACTTGAAGACGTCCG
CAAGGCATGATCTTGCAATGATATTTACTTGCAAGGTCTGTGAAACAAGA
TCTGTAAAGACAGCTTGTCGTGAATCATATGAGAAAGGCGTGGTGGTGGC
ACGATGTGGTGGGTGCAACAATCTACACCTGATTGCAGATCATCTCGGAT
GGTTTGGAGAACCCGGAAGCATTGAGGACTTCCTCGCTGCTCGTGGAGAA
GAAGTGAAGAAAGGTTCTGTTGATACGCTAAATCTAACACTTGAAGATCT
AGCTGGAAGAGAAGTCTTGAAAGACTAAATCAAATTTGTTTATATGAATA
TTTTTTTTTAAATGAAATATTCGCCTCTTGTTAAATTATGTATTACAATG
TGTTTTAACCCGAAATTGAAATTACAGAATGCTTTTTCGTGAAAAAAA
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