CV885182

Overview
NameCV885182
Unique NameCV885182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885182 vs. ExPASy Swiss-Prot
Match: FB118_ARATH (F-box protein At2g26850 OS=Arabidopsis thaliana GN=At2g26850 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.260e-43
Identity = 80/124 (64.52%), Postives = 91/124 (73.39%), Query Frame = -1
Query:  513 SDCLHDLKPGDHIEIQWRRNKEFPYGWWYGVVGHLESCGRNEHHCLCFYKAVKNLTKMSLPTDTVVLEFNQYPTGSRWRQMMINRKDHREVGNEADGFYGGIRKIYKEEEISMWKSLWPRHALE 884
            SD L++LKPGDHIEIQWRRNKEFPYGWWY VVGH+ESC  N +HC C              ++ +VLEFNQY  GSRWR+ MINR+DHRE GNE DGFYGGIRKI  +E+I MWK LWP   LE
Sbjct:  260 SDSLNELKPGDHIEIQWRRNKEFPYGWWYSVVGHMESCDGNLNHCQCHN------------SEMMVLEFNQYTVGSRWRKTMINRRDHREKGNEEDGFYGGIRKINCKEDIEMWKRLWPSSILE 371          
BLAST of CV885182 vs. ExPASy Swiss-Prot
Match: FB121_ARATH (F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.375e-40
Identity = 79/126 (62.70%), Postives = 90/126 (71.43%), Query Frame = -1
Query:  513 HNSDCLHDLKPGDHIEIQWRRNKEFPYGWWYGVVGHLESCGRNEHHCLCFYKAVKNLTKMSLPTDTVVLEFNQYPTGSRWRQMMINRKDHREVGNEADGFYGGIRKIYKEEEISMWKSLWPRHALE 890
            H SD L +LKPGDHIEIQWRRNKEFPYGWWYG+V HLESC  + +HC C              ++TVVLEFNQY  GSRWR+ MI R DH+E GNE DGFYGGIRK+  +EEI+MWK  WP   LE
Sbjct:  259 HVSDSLKELKPGDHIEIQWRRNKEFPYGWWYGLVRHLESCDGDHNHCHCHL------------SETVVLEFNQYTVGSRWRRTMIMR-DHKEEGNEEDGFYGGIRKLNCKEEIAMWKRHWPCSILE 371          
BLAST of CV885182 vs. ExPASy Swiss-Prot
Match: FB132_ARATH (F-box protein At2g41170 OS=Arabidopsis thaliana GN=At2g41170 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.493e-37
Identity = 70/126 (55.56%), Postives = 85/126 (67.46%), Query Frame = -1
Query:  513 HNSDCLHDLKPGDHIEIQWRRNKEFPYGWWYGVVGHLESCGRNEHHCLCFYKAVKNLTKMSLPTDTVVLEFNQYPTGSRWRQMMINRKDHREVGNEADGFYGGIRKIYKEEEISMWKSLWPRHALE 890
            H SDCLH L+PGDH EIQWRR KEFPYGWW+G+VGHL++C     +C C               + VV+EF Q+   S WR+ +I RKDHRE GNE +GFYGG++K+  EEEIS WK LWP  ALE
Sbjct:  259 HVSDCLHGLRPGDHFEIQWRRTKEFPYGWWFGIVGHLQNCD-GVQNCRCD------------SDENVVMEFRQFRPESPWRRTVIKRKDHRETGNEENGFYGGVKKLGTEEEISTWKQLWPSQALE 371          
The following BLAST results are available for this feature:
BLAST of CV885182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FB118_ARATH4.260e-4364.52F-box protein At2g26850 OS=Arabidopsis thaliana GN... [more]
FB121_ARATH3.375e-4062.70F-box protein At2g32560 OS=Arabidopsis thaliana GN... [more]
FB132_ARATH3.493e-3755.56F-box protein At2g41170 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885182 ID=CV885182; Name=CV885182; organism=Citrus sinensis; type=EST; length=890bp
TTTTTATTTTATCGAAAGGGAACTTTCATCTCATTCTCATCAGAAATTAT
TATCTTTGCTTCCAAAGCAAATGTCAGACGCAAAGGAACATAAAAGAAAA
ATAACAAATCAGCTTTGATTTGAGAGCATAACGTCTCGTATTTGAAGAGT
GTGTGGTAACAAAACAACTTCAAATCTCAGCAAATTAATACTACAATGCA
TATTTATGTACTTCTAAACAAGAGAGACATGCCTTAACCCTGAGTATGTT
TCTAATTTGAAGCTGAAAAAACCATCCAGCTTCAGATAGTACAACTACTA
ACAATCATGTTCATTGCATATCTTGGTGCAGAAGATACATCCAAGTTTTA
CTCTTTCACAGCCTCTTAGTGAAGGGCTAAAATAATTTAATGTACTCTAT
GATCTTCTTCGAACTTCTCCTATGAATTTAATGCTTTGTAATTCACAGTT
CAAGCGGGGAAAAAAAGAGAGGGATTGTGTATGTACAGAGTCAAAAGCCA
TTCATCGTACTATTCCAAGGCATGTCTTGGCCACAGGCTCTTCCACATTG
ATATCTCCTCCTCTTTGTAAATCTTTCTGATTCCTCCATAAAATCCATCA
GCTTCATTGCCTACTTCCCGATGATCCTTCCTGTTAATCATCATTTGCCT
CCATCTTGAGCCAGTCGGGTACTGGTTAAACTCCAAAACCACCGTATCTG
TCGGCAAACTCATCTTTGTCAGATTCTTGACCGCCTTATAGAAGCAAAGG
CAGTGATGTTCATTTCTACCACATGATTCCAAGTGCCCAACAACACCGTA
CCACCAACCATAAGGAAATTCTTTGTTTCTTCTCCACTGGATCTCAATGT
GGTCACCAGGCTTTAAGTCATGTAAACAATCTGAGTTGTG
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