CV885181

Overview
NameCV885181
Unique NameCV885181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885181 vs. ExPASy Swiss-Prot
Match: FB121_ARATH (F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.143e-63
Identity = 126/270 (46.67%), Postives = 171/270 (63.33%), Query Frame = 3
Query:    6 MLFFLISCFSVILLSKSLAKPPMKSDWRLLSPWFWRELSSFLVSWFQKGGLVIRPLKQKMSFGSKPANTEKEKISLLDLPDLTLECILEKLSPAGLCNMAGVCSSLRDRCTSDRLWEKHMKQKWGRVIGDVAKREWQWHLVSR--QRSSLMNNKKQTGFFWSLYSCWPFSWSERKTESNTEPRSSLPVDSIMAWYVSLESGKFWFPAQVYNRENGHVGFMLSCYDAQLSYDSRTDTFRARYSPHGRR--MVEENISWDRLRAPAVDTPSH 803
            +L+FLI+C S    +KSL+ PP            W   +  L+S++      +  L Q       PA+   +++S+LDLP+L L+CIL+ L P+GLC+MA VCSSLR+RC SD LWEKH+K KWG+++G  A REWQ ++ S      S  +     GF   +      S   R+ +      SSLP+DS M+ Y+SLE+G+FWFPAQVYNRENGHVGFMLSCYDA+LSYD+ TDTF+ARY PHGRR   +E+ ++WDR+RA  +D   H
Sbjct:    2 LLYFLITCLSFFFFTKSLSLPP------------WASETKTLLSFYFIKNPFMNTLHQTKH---DPASPVIDQMSVLDLPELALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISSSTYHLDSPHHQTGNLGFAKIISLIRSLSSVFREDKQRRGYASSLPLDSSMSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQARYPPHGRRASAIEKGVTWDRIRAAPIDASPH 256          
BLAST of CV885181 vs. ExPASy Swiss-Prot
Match: FB132_ARATH (F-box protein At2g41170 OS=Arabidopsis thaliana GN=At2g41170 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.560e-62
Identity = 122/234 (52.14%), Postives = 158/234 (67.52%), Query Frame = 3
Query:  129 LVSWFQKGGLV--IRPLKQKMSFGSKPANTEKE-KISLLDLPDLTLECILEKLSPAGLCNMAGVCSSLRDRCTSDRLWEKHMKQKWGRVIGDVAKREWQWHLVSRQR--SSLMNNKKQTGFFWS---LYSCWPFSW--SERKTESNTEPRSSLPVDSIMAWYVSLESGKFWFPAQVYNRENGHVGFMLSCYDAQLSYDSRTDTFRARYSPHGRRMVEENISWDRLRAPAVDTPS 800
            +VSW  +  +   IR L  +     K  N E E K+SLLDLPDLTL+CILEKLSP+ LC M  VCS LRD+C SD LWEKHM+ KWGR++GD A +EW+ H+ +  R  +S  ++ +++   WS   + +  PF+W  S    E+        P+DS+M WY +LE+GKFWFPAQVYNRENGHVGFM+SCYDA++ YD +TDTF+ARYS HGRR  EE ++W RLR    DT S
Sbjct:   22 IVSWLARSIIRNGIRTLTWRKETKRKKKNQEDENKMSLLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDHLWEKHMETKWGRLMGDAAIQEWKSHVATIMRCLTSSSSSSRKSKPNWSSRFVANLKPFAWLSSNHGCENRGSSSYLAPIDSVMYWYSNLENGKFWFPAQVYNRENGHVGFMMSCYDAKIRYDFKTDTFQARYSAHGRRAAEEKVTWQRLRPSQDDTKS 255          
BLAST of CV885181 vs. ExPASy Swiss-Prot
Match: FB118_ARATH (F-box protein At2g26850 OS=Arabidopsis thaliana GN=At2g26850 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.614e-59
Identity = 126/275 (45.82%), Postives = 168/275 (61.09%), Query Frame = 3
Query:    6 MLFFLISCFSVILLSKSLAKPPMKSDWRLLSPWFWRELSSFLVSWFQKGGLVIRPLKQKMSFGSKPANTEKEKISLLDLPDLTLECILEKLSPAGLCNMAGVCSSLRDRCTSDRLWEKHMKQKWGRVIGDVAKREWQWHLVS-------RQRSSLMNNKKQTGFFWSLYSCWPFSWSERKTESNTEPRSSLPVDSIMAWYVSLESGKFWFPAQVYNRENGHVGFMLSCYDAQLSYDSRTDTFRARYSPHGRR--MVEENISWDRLRAPAVDTPSH 803
            +L+ LI+C S    SKSL+ P             W   +  L+S++    L    L Q     + P      K+S+LDLPDL L+CILE L P+ LC MA VCSSLR+RC SD LWEKH+K KWG+++G  A +EWQ +L S         ++S +   K      SL S +      R  +      SS+P+DS M +Y+SLE+G+FWFPAQVYNRENGHVGFMLSCYDA+LSYD+ T+TF+ARY PHG+R   VE++++W+R+RA  VD   H
Sbjct:    2 LLYLLITCLSFFFFSKSLSFPQ------------WASKTKNLLSFYFSKYLFTNSLHQITPDLASPV---LGKMSILDLPDLPLDCILELLPPSELCTMARVCSSLRERCVSDHLWEKHLKTKWGKILGPSAHKEWQCYLSSPYHLDSPHHKTSHLGLAKIISLMRSLSSIF------RDDDHRRRYPSSIPLDSTMNFYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTDTNTFQARYPPHGKRAIAVEKDVTWERIRAAPVDASPH 255          
The following BLAST results are available for this feature:
BLAST of CV885181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FB121_ARATH3.143e-6346.67F-box protein At2g32560 OS=Arabidopsis thaliana GN... [more]
FB132_ARATH1.560e-6252.14F-box protein At2g41170 OS=Arabidopsis thaliana GN... [more]
FB118_ARATH1.614e-5945.82F-box protein At2g26850 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885181 ID=CV885181; Name=CV885181; organism=Citrus sinensis; type=EST; length=804bp
GTTCCATGCTTTTCTTCTTGATTTCTTGTTTCTCTGTCATATTACTATCA
AAGTCTTTGGCTAAACCACCGATGAAGAGTGATTGGAGATTGTTGTCTCC
ATGGTTTTGGAGGGAATTATCAAGCTTTTTGGTTTCGTGGTTTCAAAAAG
GCGGCCTTGTCATTAGGCCATTGAAGCAGAAGATGAGTTTTGGATCAAAA
CCTGCAAATACGGAGAAAGAGAAAATTTCCCTCTTGGATTTGCCTGATTT
AACCTTGGAATGCATTCTTGAGAAGCTTTCACCAGCTGGTTTGTGTAACA
TGGCTGGAGTTTGCAGTTCTCTTCGAGATAGATGTACAAGTGATCGTTTG
TGGGAGAAACACATGAAGCAGAAATGGGGGAGAGTTATTGGTGATGTTGC
CAAAAGAGAATGGCAATGGCACTTGGTCTCAAGACAGAGATCAAGCCTTA
TGAATAACAAGAAACAAACAGGATTTTTCTGGTCTCTCTATAGCTGTTGG
CCTTTTTCTTGGAGTGAACGAAAGACGGAGAGCAATACTGAGCCGAGAAG
TTCATTACCAGTTGATTCAATCATGGCTTGGTATGTTTCTCTTGAAAGTG
GCAAATTCTGGTTCCCAGCTCAGGTCTATAACCGTGAGAATGGGCATGTT
GGGTTTATGCTGTCTTGTTACGATGCTCAGCTCAGCTATGATTCCCGGAC
AGATACTTTTCGGGCAAGGTACTCACCCCATGGACGACGAATGGTAGAGG
AAAATATATCCTGGGATAGGCTGAGAGCACCAGCAGTTGATACTCCTTCA
CATG
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