CV885175

Overview
NameCV885175
Unique NameCV885175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3394 contig Csv1_Contig3394:1..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.689e-65
Identity = 129/234 (55.13%), Postives = 167/234 (71.37%), Query Frame = -3
Query:  185 YCDVVTTTTHKSLRVPRGGMIFFKKD---------PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 859
            Y DVVTTTTHKSLR PRG MIFF+K           VL  + E  IN AVFPGLQGGPHNHTI GLAV LK A + E+K YQ +V+SN    A  L+E GY+LVSGG+DNHLVLV+L+P GIDG+RVEK+L+  +I  NKN+VPGD SA+VPGGIR+G+PA+T+RGF E++F  +A++  + V I L+ K   QG+KL+DF++ + S + ++ + +A LR  VE    QFP  G
Sbjct:  276 YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVL-YDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSS-TIQSEIAKLRHEVEEFAKQFPTIG 507          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 7.094e-64
Identity = 127/237 (53.59%), Postives = 166/237 (70.04%), Query Frame = -3
Query:  182 KYCDVVTTTTHKSLRVPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 862
            ++C VV+TTTHK+LR  R GMIF++K     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEF+ YQ +VV+NCRALA  L+ LGY++V+GGSDNHL+LVDLR  G DG R EK+L+   I  NKN+ PGDKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +  V   + L++FM  +          VA LR  VE+  T FP+PG+
Sbjct:  246 EHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAE-EHHRAVAALRAEVESFATLFPLPGL 481          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.265e-64
Identity = 126/233 (54.08%), Postives = 164/233 (70.39%), Query Frame = -3
Query:  185 YCDVVTTTTHKSLRVPRGGMIFFKKD--------PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 859
            Y DVVTTTTHKSLR PRG MIF++K           +  + E  IN AVFPGLQGGPHNHTI GLAV LK A +PE++ YQ +V+SN    A  L E GY+LVSGG+DNHLVLV+++  GIDG+RVEK+L+  +I  NKN+VPGD SA+VPGGIR+G+PA+T+RGF E++FV +ADF    V+I ++ K   QG+KL+DF+  + S +  + + +A LR  VE    QFP  G
Sbjct:  277 YADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLES-SAPIKSEIAKLRHDVEEYAKQFPTIG 508          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 1.210e-63
Identity = 126/237 (53.16%), Postives = 165/237 (69.62%), Query Frame = -3
Query:  182 KYCDVVTTTTHKSLRVPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 862
            ++C VV+TTTHK+LR  R GMIF++K     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEF+ YQ +VV+NCRALA  L+ LGY++V+GGSDNHL+LVDLR  G DG R EK+L+   I  NKN+ PGDKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +  V   + L++FM  +          V  LR  VE+  T FP+PG+
Sbjct:  246 EHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAE-EHQRAVTALRAEVESFATLFPLPGL 481          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 1.210e-63
Identity = 129/236 (54.66%), Postives = 166/236 (70.34%), Query Frame = -3
Query:  185 KYCDVVTTTTHKSLRVPRGGMIFFKKDP----VLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK--LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 862
            +Y DVVTTTTHKSLR PRG +IF++K        GV+    LE  IN+AVFPGLQGGPHNHTI G+AV L+   S +F  Y  +V+ N + LA R+ + GY L +GG+DNHL+LVDLRP+G++GAR E +LD+A+I  NKN+ PGD SAL PGGIR+G+PA+T+RGF E++F  + DFIHEGV+I   AKK     G  L+DF +F T  N     +VADL  RVE  +T+F IPG
Sbjct:  272 EYSDVVTTTTHKSLRGPRGALIFYRKGVRSTNAKGVDTLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALRQCLSEDFVQYGEQVLKNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQI---AKKYNAEAGKTLKDFKSF-TETNEPFKKDVADLAKRVEEFSTKFEIPG 503          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.580e-63
Identity = 126/237 (53.16%), Postives = 166/237 (70.04%), Query Frame = -3
Query:  182 KYCDVVTTTTHKSLRVPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 862
            ++C VVTTTTHK+LR  R GMIF++K     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A + EFKVYQ++VV+NCRAL+  L ELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+   I  NKN+ PGD+SAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+TL+ +      + L++F   +    +     V  LR +VE+  + FP+PG+
Sbjct:  246 EHCHVVTTTTHKTLRGCRAGMIFYRKGVQSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKY--QGAVQALREKVESFASLFPLPGL 480          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 243.047 bits (619), Expect = 1.580e-63
Identity = 131/236 (55.51%), Postives = 164/236 (69.49%), Query Frame = -3
Query:  185 KYCDVVTTTTHKSLRVPRGGMIFFKKDP----VLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK--LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 862
            +Y DVVTTTTHKSLR PRG MIF++K        GVE    LE  IN+AVFPGLQGGPHNHTI G+AV LK   S +F  Y  +++ N + LA RL + GY L +GG+DNHL+LVDLRP+G++GAR E ILD+A+I  NKN+ PGD SAL PGGIR+G+PA+T+RGF E++F  + DFIHEGV+I   AKK     G  L+DF  F T+ N      VA+L  RVE  + +F IPG
Sbjct:  276 EYSDVVTTTTHKSLRGPRGAMIFYRKGVRSVNAKGVETLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQI---AKKYNAEAGKTLKDFKAF-TATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.696e-63
Identity = 126/237 (53.16%), Postives = 165/237 (69.62%), Query Frame = -3
Query:  182 KYCDVVTTTTHKSLRVPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 862
            ++C VVTTTTHK+LR  R GMIF++K     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A + EFKVYQ++VV+NCRAL+  L ELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+   I  NKN+ PGD+SAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+TL+ +      + L++F   +    +     V  LR  VE+  + FP+PG+
Sbjct:  246 EHCHVVTTTTHKTLRGCRAGMIFYRKGVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAA--VQALREEVESFASLFPLPGL 480          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 3.521e-63
Identity = 126/237 (53.16%), Postives = 164/237 (69.20%), Query Frame = -3
Query:  182 KYCDVVTTTTHKSLRVPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAK-KLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 862
            ++C VVTTTTHK+LR  R GMIF+++     DP  G E    LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+   I  NKN+ PGDKSAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+T++ +      + L++F   +          V  LR  VE+    FP+PG+
Sbjct:  246 EHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDE-KHQRAVRALRQEVESFAALFPLPGL 481          
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 7.844e-63
Identity = 123/237 (51.90%), Postives = 165/237 (69.62%), Query Frame = -3
Query:  182 KYCDVVTTTTHKSLRVPRGGMIFFKK-----DPVLG----VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 862
            ++C VVTTTTHK+LR  R GMIF++K     DP  G     ELES IN+AVFPGLQGGPHNH I G+AV LK A + EFK+YQ +V++NCRAL+  L ELGYK+V+GGSDNHL+L+DLR  G DG R EK+L+   I  NKN+ PGDKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +  +   + L++F   +      + + VA LR  VE   + F +PG+
Sbjct:  240 EHCHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDE-KIQSAVATLREEVENFASNFSLPGL 475          
The following BLAST results are available for this feature:
BLAST of CV885175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_ARATH1.689e-6555.13Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_BOVIN7.094e-6453.59Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYM_SOLTU9.265e-6454.08Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_SHEEP1.210e-6353.16Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_CAEEL1.210e-6354.66Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_PONAB1.580e-6353.16Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_CAEBR1.580e-6355.51Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_HUMAN2.696e-6353.16Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_RABIT3.521e-6353.16Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_MOUSE7.844e-6351.90Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885175 ID=CV885175; Name=CV885175; organism=Citrus sinensis; type=EST; length=864bp
AAAGACCATTAGATAAAAATTTGGCCCTATAATTCATCATTTTCCATAAG
TAATTTAACCCCTATATTATAATAATTTAATTTTCCCCTGCAGTTCACAC
AAGCAAAAACATAGTGCCTGTCATTTTCCCCCATGAGAAAGCATCAAACG
GGTTTTAACCTGTAAAACAACTATACAATCATACTCCGGGGATGGGAAAC
TGGGTTGTGAGAGCTTCAACCCGACCACGAAGATCGGCGACATTATTCAT
CAACGAGAAATTGGGTGATGTGACAAAATTCATGAAGTCTTGGAGCTTTG
ATCCTTGAACCAACTTTTTAGCTTCCAGGGTTATTTCTACACCCTCGTGT
ATAAAGTCAGCAATTGCAACAAATTCTTTCTCAGAAAATCCTCTAGTTGT
CATTGCAGGTGAGCCAATGCGAATACCACCCGGCACTAGAGCACTCTTGT
CACCAGGCACTGAATTTTTGTTGAGAGTGATGTAGGCCATGTCAAGAATT
TTCTCTACCCGAGCCCCATCAATACCCATCGGCCTTAGATCTACAAGAAC
CAGGTGATTGTCGCTCCCTCCTGACACCAGCTTGTAACCTAATTCAACCA
ATCGGCTTGCAAGCGCTCTGCAATTAGAGACCACCTTGTTCTGGTAAACT
TTAAATTCTGGAGACTGCGCATGCTTCAAACAAACCGCAAGGCCCCCAAT
TGTATGGTTATGAGGACCACCCTGTAAACCTGGGAAAACAGCATTGTTAA
TGGCAGATTCCAGTTCCACTCCAAGGACAGGATCTTTCTTGAAGAAGATC
ATGCCACCTCTTGGAACTCTCAAAGACTTGTGAGTTGTTGTTGTCACGAC
GTCACAGTACTTGA
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