CV885173

Overview
NameCV885173
Unique NameCV885173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.090e-26
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   71 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKA 129
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.090e-26
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   71 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 129
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   73 VLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 131
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   73 VLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 131
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   76 VLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 134
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   76 VLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 134
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   74 VLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   74 VLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP+LLPKK+
Sbjct:   70 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKN 128
[Close]
BLAST of CV885173 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.354e-25
Identity = 56/59 (94.92%), Postives = 59/59 (100.00%), Query Frame = -3 
Query:  270 VLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 446
            VLELAGNAARDNKKNRIIPRH+LLAVRNDEELGKLLAGVTIAHGGVLPNINP+LLPKK+
Sbjct:   72 VLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKT 130
The following BLAST results are available for this feature:
BLAST of CV885173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
H2A_EUPES8.090e-2698.31Histone H2A OS=Euphorbia esula PE=2 SV=1[more]
H2A2_MEDTR8.090e-2698.31Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A6_ORYSJ1.057e-2596.61Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI1.057e-2596.61Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A5_ORYSJ1.057e-2596.61Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI1.057e-2596.61Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A4_ORYSJ1.057e-2596.61Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]
H2A4_ORYSI1.057e-2596.61Probable histone H2A.4 OS=Oryza sativa subsp. indi... [more]
H2A1_MEDTR1.057e-2596.61Probable histone H2A.1 OS=Medicago truncatula GN=M... [more]
H2A3_MEDTR2.354e-2594.92Probable histone H2A.3 OS=Medicago truncatula PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013B01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885173 ID=CV885173; Name=CV885173; organism=Citrus sinensis; type=EST; length=652bp
ATTACCTTCTGCAACAAATGAAATATCGGAACAAGTACCACGATTTCATT
CATTCTACAGTCGAAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAA
AACAGTAGAATGGTCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGC
CGAATACATCAAAGAAGTAACATACACACAGTTAAAGATGAGAAGACTAA
AAACTAAGCCTTCTTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCT
CTTTCGTTGCTGCCTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATG
TTTGGCAAGACTCCACCGTGAGCAATTGTCACACCAGCAAGAAGCTTCCC
AAGCTCCTCATCATTTCTTACAGCCAACAGAACATGCCTTGGGATGATCC
TATTCTTCTTGTTGTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTAA
ACACAGATTCAGCCCAACAAATTATTACCAAATAAATCACACAATTATGA
ACCATAGTTCTTCCCATCTACAGAGAAGCAACGTCAGAGAAAAGACACGG
TATTAATCATTATTTGGTTCAAATTCAAAAGCAATTTTATGAATTTTGAT
ACAAGCTGGGGTTACTAAATATAATTTGGATGCTGTTTGACATTCGTAAA
AA
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