CV885158

Overview
NameCV885158
Unique NameCV885158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885158_ssr233 microsatellite CV885158_ssr233:233..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: DDPS6_ARATH (Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana GN=At2g17570 PE=2 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 6.021e-67
Identity = 125/237 (52.74%), Postives = 174/237 (73.42%), Query Frame = -1
Query:  227 EGAGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHHAYLEXXXKQL 937
            +G+GH+AGF  LMS+L+YC EL +KYV+IYAFSIDNF+R   E+                ++  + +YG+RV FIGNL L+++ +R AAEKVM+AT+KN+R+V+LIC+AY+ST+EIV  V+++C + K    +A   ++  +D   +  + +N+EK  I+LVD+E++M M V P+PDILIR+SGE RLSNFLLWQ+ N  L +P ALWPEIGLRHL+WAILNFQR+H+YLE   KQL
Sbjct:   61 DGSGHKAGFSALMSMLQYCYELGIKYVTIYAFSIDNFRRKPEEVESVMDLMLEKIKSLLEKESIVHQYGIRVYFIGNLALLNDQVRAAAEKVMKATAKNSRVVLLICIAYNSTDEIVQAVKKSC-INKSDNIEASNYKHEDSDSDIEGTDMENQEKK-IQLVDIEENMQMSVAPNPDILIRSSGETRLSNFLLWQTGNTQLCSPAALWPEIGLRHLLWAILNFQRNHSYLEKRKKQL 295          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: DDPS8_ARATH (Dehydrodolichyl diphosphate synthase 8 OS=Arabidopsis thaliana GN=At5g60510 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 7.163e-44
Identity = 89/232 (38.36%), Postives = 136/232 (58.62%), Query Frame = -1
Query:  245 GEGAGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHHAYLE 940
            G  AGHRAGF+++  +L+YC E+ V YV++YAF +DNFKR   E++               +    +  GVR+ F G+L  ++E  R A +K+M  T +N  +++++C+AYS++ EIVH V ++C+   KT                          + ++L D+E+ MY  V P PD+++RT G +RLSNF+ WQ+S  +L+  EALWPE+GL HL+WAIL FQR   YL+
Sbjct:   57 GLDAGHRAGFISVKYILQYCKEIGVPYVTLYAFGMDNFKRGPEEVKCVMDLMLEKVELTIDQAVSGNMNGVRIIFAGDLNSLNERFRAATKKLMELTEENRDLIVVVCVAYSTSVEIVHAVRDSCVRKSKT----------------------GDGSSALELSDIEECMYTSVVPVPDLVVRTGGGDRLSNFMTWQTSRALLHRTEALWPELGLWHLVWAILKFQRMQDYLQ 266          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: DDPS7_ARATH (Dehydrodolichyl diphosphate synthase 7 OS=Arabidopsis thaliana GN=At5g60500 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.327e-41
Identity = 89/231 (38.53%), Postives = 135/231 (58.44%), Query Frame = -1
Query:  248 GEGAGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHHAYL 940
            G  AGHRAGF+++  +L+YC E+ V YV+++AF +DNFKR   E++               +    +  GVR+ F G+L  ++E  R A +K+M  T +N  +++++C+AYS++ EIVH V ++C V K T                        +   ++L D+E+ MY  + P PD++IRT G +RLSNF+ WQ+S  +L+  EALWPE+GL HL+WAIL FQR   YL
Sbjct:   56 GLDAGHRAGFISVKYILQYCKEIGVPYVTLHAFGMDNFKRGPEEVKCVMDLMLEKVELAIDQAVSGNMNGVRIIFAGDLDSLNEHFRAATKKLMELTEENRDLIVVVCVAYSTSLEIVHAVRKSC-VRKCT---------------------NGDDLVLLELSDVEECMYTSIVPVPDLVIRTGGGDRLSNFMTWQTSRSLLHRTEALWPELGLWHLVWAILKFQRMQDYL 264          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_THETN (Undecaprenyl pyrophosphate synthetase OS=Thermoanaerobacter tengcongensis GN=uppS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.823e-32
Identity = 81/221 (36.65%), Postives = 118/221 (53.39%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH+AG   +  +++ C EL +KY+++YAFS +N+KR + E+ +              E   L+K  V V FIG++  + E  ++  EK  + T KNT +V+ I L Y   +EIV   +  C   KK   +   P     D+TED                + +H+Y    PDPD++IRTSGE RLSNFLLWQS+   L+  E LWP+   RHLI A+L +Q
Sbjct:   43 GHKAGVNAVREVIRSCRELGIKYLTLYAFSTENWKRPKEEVDFLMDLLVEYLSKEVDE---LNKNNVVVKFIGDISRLPEKCQIEIEKAQKLTEKNTGLVVNIALNYGGRDEIVKATQNIC---KKVLNRELSPE----DITEDT---------------ITQHLYTASQPDPDLIIRTSGEKRLSNFLLWQSAYSELWFTEVLWPDFKKRHLIEALLYYQ 238          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: RER2_YEAST (Dehydrodolichyl diphosphate synthetase OS=Saccharomyces cerevisiae GN=RER2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.196e-28
Identity = 71/229 (31.00%), Postives = 110/229 (48.03%), Query Frame = -1
Query:  248 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSN--CMLYAPEALWPEIGLRHLIWAILNFQRHHAYL 928
            GH AGF+++  +L+ C E  V   +++AFSI+NFKR+  E+                      KYGVR+  IG+L L+ + +       +  T  N R  + IC  Y+  EEI+H ++ET +                          ++K+   I    LE H+Y    P  D+LIRTSG +RLS+FL+WQ+S+    +   + LWPE G   + W +L F  H ++L
Sbjct:   56 GHEAGFVSMSRILELCYEAGVDTATVFAFSIENFKRSSREVESLMTLARERIRQITERGELACKYGVRIKIIGDLSLLDKSLLEDVRVAVETTKNNKRATLNICFPYTGREEILHAMKETIV--------------------------QHKKGAAIDESTLESHLYTAGVPPLDLLIRTSGVSRLSDFLIWQASSKGVRIELLDCLWPEFGPIRMAWILLKFSFHKSFL 258          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: DHDDS_MOUSE (Dehydrodolichyl diphosphate synthase OS=Mus musculus GN=Dhdds PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.039e-26
Identity = 78/228 (34.21%), Postives = 116/228 (50.88%), Query Frame = -1
Query:  245 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHHAYLE 928
            GH  GF  L   L++C+ L +  V++YAFSI+NFKR+++E+                E   L K+GV +  +G+L L+   ++      ++AT    +  + +C AY+S  EI + V E   +    +    +P    +DV+E                 L+K +Y    P PDILIRTSGE RLS+FLLWQ+S+  L     LWPE    +L  AIL FQR+H  L+
Sbjct:   50 GHTQGFNKLAETLRWCLNLGILEVTVYAFSIENFKRSKSEVDGLLDLARQKFSCLMEEQEKLQKHGVCIRVLGDLHLLPLDLQEKIAHAIQATKNYNKCFLNVCFAYTSRHEIANAVRE---MAWGVEQGLLEP----SDVSESL---------------LDKCLYSNHSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNLCEAILQFQRNHGALQ 255          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: DHDDS_HUMAN (Dehydrodolichyl diphosphate synthase OS=Homo sapiens GN=DHDDS PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 6.735e-26
Identity = 76/228 (33.33%), Postives = 116/228 (50.88%), Query Frame = -1
Query:  245 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQRHHAYLE 928
            GH  GF  L   L++C+ L +  V++YAFSI+NFKR+++E+                E   L K+GV +  +G+L L+   ++    + ++AT    +  + +C AY+S  EI + V E   +    +     P    +D++E                 L+K +Y    P PDILIRTSGE RLS+FLLWQ+S+  L     LWPE    +L  AIL FQ +H+ L+
Sbjct:   50 GHSQGFNKLAETLRWCLNLGILEVTVYAFSIENFKRSKSEVDGLMDLARQKFSRLMEEKEKLQKHGVCIRVLGDLHLLPLDLQELIAQAVQATKNYNKCFLNVCFAYTSRHEISNAVRE---MAWGVEQGLLDP----SDISESL---------------LDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNLFEAILQFQMNHSVLQ 255          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_HELMO (Undecaprenyl pyrophosphate synthetase OS=Heliobacillus mobilis GN=uppS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.233e-24
Identity = 69/222 (31.08%), Postives = 109/222 (49.10%), Query Frame = -1
Query:  266 AGHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 931
            AGHRAG  +L  +L+ C + ++ Y+++YAFS +N+KR  +E+                    L   GVR+  IG +  +    R   EK +  T+ NTR+V+ + L Y    EIV  V+    +              +  V  D  + K           + +++Y    PDPD+LIR SGE RLSNFLLWQS+   ++    LWP+ G + ++ AI+++Q
Sbjct:   53 AGHRAGVESLRRVLEVCEDYNIAYLTVYAFSTENWKRPADEVNALFDLLVEYLHRELNT---LHSKGVRIRAIGKIEDLPGGPRRELEKAIAKTANNTRLVLNVALNYGGRFEIVEAVKSIARLAA------------EGKVNPDQIDEKY----------MSQYLYTADVPDPDLLIRPSGELRLSNFLLWQSAYTEIWVTPTLWPDFGRKEMVQAIVDYQ 249          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_THET2 (Undecaprenyl pyrophosphate synthetase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=uppS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.103e-23
Identity = 69/221 (31.22%), Postives = 105/221 (47.51%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH  G      +L++C+E+ +K V+++ FS DNFKR   E+                ED  + ++ VRV FIG     S  +  A E++ R T  +  + + I L Y   EEIV  V+   L   + + +   P+     +T +               D+ +H+Y    PDPD +IRTSGE RLS FLLWQS+    Y  + LWPE      + A+ ++Q
Sbjct:   54 GHEFGVQKAYEVLEWCLEMGIKTVTVWVFSTDNFKRPPEEVE-TLMNLFLREAERMAEDHRILEHQVRVRFIGRREGFSPEVVRAIERLERRTEGHRGMFLNIALGYGGREEIVDAVKRLLL---EAEARGLSPKEVAEGLTPE---------------DIARHLYTAGLPDPDFIIRTSGEIRLSGFLLWQSAYSEFYFADVLWPEFRKIDFLRALRSYQ 255          
BLAST of CV885158 vs. ExPASy Swiss-Prot
Match: UPPS_THET8 (Undecaprenyl pyrophosphate synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=uppS PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.553e-22
Identity = 68/221 (30.77%), Postives = 105/221 (47.51%), Query Frame = -1
Query:  266 GHRAGFLTLMSLLKYCVELSVKYVSIYAFSIDNFKRTQNEIRYXXXXXXXXXXXXXXEDGFLSKYGVRVCFIGNLGLVSEPIRVAAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEKNTIKLVDLEKHMYMGVYPDPDILIRTSGENRLSNFLLWQSSNCMLYAPEALWPEIGLRHLIWAILNFQ 928
            GH  G      +L++C+E+ +K V+++ FS DNFKR   E+                ED  + ++ VRV FIG     S  +  A E++ R T  +  + + I + Y   EEIV  V+   L   + + +   P+     +T +               D+ +H+Y    PDPD +IRTSGE RLS FLLWQS+    Y  + LWPE      + A+ ++Q
Sbjct:   54 GHEFGVQKAYEVLEWCLEMGIKTVTVWVFSTDNFKRPPEEVE-TLMNLFLREAERMAEDHRILEHQVRVRFIGRREGFSPEVVRAIERLERRTEGHRGMFLNIAMGYGGREEIVDAVKRLLL---EAEARGLSPKEVAEGLTPE---------------DIARHLYTAGLPDPDFIIRTSGEIRLSGFLLWQSAYSEFYFADVLWPEFRKIDFLRALRSYQ 255          
The following BLAST results are available for this feature:
BLAST of CV885158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
DDPS6_ARATH6.021e-6752.74Dehydrodolichyl diphosphate synthase 6 OS=Arabidop... [more]
DDPS8_ARATH7.163e-4438.36Dehydrodolichyl diphosphate synthase 8 OS=Arabidop... [more]
DDPS7_ARATH3.327e-4138.53Dehydrodolichyl diphosphate synthase 7 OS=Arabidop... [more]
UPPS_THETN2.823e-3236.65Undecaprenyl pyrophosphate synthetase OS=Thermoana... [more]
RER2_YEAST7.196e-2831.00Dehydrodolichyl diphosphate synthetase OS=Saccharo... [more]
DHDDS_MOUSE1.039e-2634.21Dehydrodolichyl diphosphate synthase OS=Mus muscul... [more]
DHDDS_HUMAN6.735e-2633.33Dehydrodolichyl diphosphate synthase OS=Homo sapie... [more]
UPPS_HELMO8.233e-2431.08Undecaprenyl pyrophosphate synthetase OS=Heliobaci... [more]
UPPS_THET29.103e-2331.22Undecaprenyl pyrophosphate synthetase OS=Thermus t... [more]
UPPS_THET81.553e-2230.77Undecaprenyl pyrophosphate synthetase OS=Thermus t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885158 ID=CV885158; Name=CV885158; organism=Citrus sinensis; type=EST; length=943bp
GTAATACATTCCATATGGTTTTATTTTGAAAAGTCACCTTTCATGGGGTT
TGTGGTAGCATATTATCCCATTAAGAATCTAACCGACCACGCAAACATAA
AGGACAGCATTTGCAGATGCTTATCTGTTTGAGCTTCCACCAAAACTCAC
CATGATGTGAACCTAGGAGCAGAAATCACACGATGTTGTTCAGATAGTAT
ATGGTTCTAGGGGGCAAAGGATACTAGAGCTGCTTCTTCTTCTTTTCCAA
ATAGGCGTGGTGTCGTTGAAAGTTCAAGATAGCCCAGATCAAGTGCCGCA
AACCAATTTCTGGCCACAGTGCTTCTGGGGCATACAACATGCAGTTGCTG
CTCTGCCAAAGAAGGAAATTGCTCAGGCGGTTCTCGCCAGAAGTTCGGAT
GAGGATGTCAGGATCTGGATATACACCCATGTACATATGCTTCTCAAGAT
CTACAAGCTTAATAGTATTTTTCTCCTTATTTTTATGCTCATCAGCATCT
TCAGTAACATCATTTTGAGGATTACGTGGCTTAAATGCTTGGGGCTGGGT
TTTCTTTGTAACGAGGCAGGTTTCTTCAACAGTATGGACGATCTCCTCAG
TGGAACTATATGCCAGGCAGATTAGAATCACGATCCTGGTGTTTTTGGAA
GTAGCTCTCATCACTTTTTCAGCTGCAACCCTAATAGGCTCACTCACTAG
TCCTAAGTTGCCTATGAAACATACTCTGACACCATATTTACTAAGAAAAC
CATCTTCCCGAAGCAGCAACTCCATCTTTTCCAACATTAGATCCATCAAA
TATCGAATCTCGTTTTGCGTTCGTTTGAAATTATCTATACTGAAGGCGTA
GATAGAGACATACTTCACACTCAATTCGACGCAGTACTTCAACAGGGACA
TGAGGGTCAAAAATCCAGCCCTGTGACCAGCCCCCTCTCCTGC
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