CV885155

Overview
NameCV885155
Unique NameCV885155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885155_ssr458 microsatellite CV885155_ssr458:458..469. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig308 contig Csv1_Contig308:860..1661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_NEMVE (Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis GN=v1g163572 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.032e-58
Identity = 112/180 (62.22%), Postives = 138/180 (76.67%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQL 542
            PH+LRYL TA I NKRRRP  KD +KVIQQE  +Y+DPITEFL C+YVN+DFDGAQKK++ECE V+LND FL           V  RD+F+ENARLFIFET+CRIHQ I +++LAEKLN+  EEA+RWIVNLIRN+KLDAKID+K G V+M    P+VY+Q+I+ TK L  +T  L G +
Sbjct:  252 PHILRYLTTAVITNKRRRPVLKDLVKVIQQESYTYRDPITEFLECLYVNFDFDGAQKKLRECETVLLNDFFL-----------VACRDDFIENARLFIFETFCRIHQCISISMLAEKLNMTPEEAERWIVNLIRNAKLDAKIDSKLGHVVMGVQAPSVYQQVIEKTKNLQYKTQVLAGNI 420          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EI3EA_XENLA (Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus laevis GN=eif3e-A PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.085e-51
Identity = 104/191 (54.45%), Postives = 137/191 (71.73%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQA 566
            PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I +++LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK L+ R+  L   + +   T +
Sbjct:  252 PHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISISMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLAFRSQMLAMNIEKKMNTNS 431          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_XENTR (Eukaryotic translation initiation factor 3 subunit E OS=Xenopus tropicalis GN=eif3e PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.723e-51
Identity = 103/179 (57.54%), Postives = 133/179 (74.30%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I +++LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK L+ R+  L
Sbjct:  252 PHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISISMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLAFRSQML 419          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_RAT (Eukaryotic translation initiation factor 3 subunit E OS=Rattus norvegicus GN=Eif3e PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.723e-51
Identity = 104/179 (58.10%), Postives = 132/179 (73.74%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+  L
Sbjct:  251 PHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQML 418          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_PONAB (Eukaryotic translation initiation factor 3 subunit E OS=Pongo abelii GN=EIF3E PE=2 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.723e-51
Identity = 104/179 (58.10%), Postives = 132/179 (73.74%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+  L
Sbjct:  251 PHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQML 418          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_MOUSE (Eukaryotic translation initiation factor 3 subunit E OS=Mus musculus GN=Eif3e PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.723e-51
Identity = 104/179 (58.10%), Postives = 132/179 (73.74%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+  L
Sbjct:  251 PHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQML 418          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_MACFA (Eukaryotic translation initiation factor 3 subunit E OS=Macaca fascicularis GN=EIF3E PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.723e-51
Identity = 104/179 (58.10%), Postives = 132/179 (73.74%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+  L
Sbjct:  251 PHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQML 418          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_HUMAN (Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.723e-51
Identity = 104/179 (58.10%), Postives = 132/179 (73.74%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+  L
Sbjct:  251 PHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQML 418          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_BOVIN (Eukaryotic translation initiation factor 3 subunit E OS=Bos taurus GN=EIF3E PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.723e-51
Identity = 104/179 (58.10%), Postives = 132/179 (73.74%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKL 530
            PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I + +LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+  L
Sbjct:  251 PHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQML 418          
BLAST of CV885155 vs. ExPASy Swiss-Prot
Match: EIF3E_SALSA (Eukaryotic translation initiation factor 3 subunit E OS=Salmo salar GN=eif3e PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.557e-51
Identity = 105/193 (54.40%), Postives = 139/193 (72.02%), Query Frame = 3
Query:    3 PHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLIDHTKGLSGRTYKLVGQLLEHAQTQAAR 572
            PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFD AQKK++ECE V++ND FL   +ED           F+ENARLFIFET+CRIHQ I +++LA+KLN+  EEA+RWIVNLIRN++LDAKID+K G V+M     + Y+Q+I+ TK LS R+ +++   +E     A+R
Sbjct:  252 PHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDSAQKKLRECESVLVNDFFLVACLED-----------FIENARLFIFETFCRIHQCISISMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRS-QMLAMNIEKKMAHASR 432          
The following BLAST results are available for this feature:
BLAST of CV885155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3E_NEMVE1.032e-5862.22Eukaryotic translation initiation factor 3 subunit... [more]
EI3EA_XENLA2.085e-5154.45Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_XENTR2.723e-5157.54Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_RAT2.723e-5158.10Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_PONAB2.723e-5158.10Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MOUSE2.723e-5158.10Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MACFA2.723e-5158.10Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_HUMAN2.723e-5158.10Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_BOVIN2.723e-5158.10Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_SALSA3.557e-5154.40Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885155 ID=CV885155; Name=CV885155; organism=Citrus sinensis; type=EST; length=799bp
CTCCCCATCTTTTACGCTATTTAGCTACTGCATTCATTGTCAACAAAAGG
AGGAGACCTCAATTCAAAGATTTTATTAAGGTTATCCAGCAAGAGCAAAA
CTCGTACAAAGATCCCATTACAGAGTTTTTGGCATGTGTGTACGTCAATT
ATGACTTTGATGGGGCACAGAAGAAGATGAAGGAGTGTGAAGAAGTGATA
TTGAATGATCCTTTCCTTGGCAAACGAGTTGAAGATAGCAACTTTGCTAC
TGTTCCTTTGAGAGATGAGTTCCTCGAAAATGCTCGGCTATTCATCTTTG
AGACCTATTGTCGAATTCATCAACGCATTGATATGGCAGTGCTTGCTGAG
AAGTTGAATCTAAATTATGAGGAAGCTCAAAGATGGATTGTGAATCTTAT
TCGGAACTCAAAACTTGATGCCAAGATTGATGCAAAGTCGGGAACTGTTA
TCATGGAACCCACCCACCCCAACGTGTATGAGCAATTGATTGACCACACC
AAAGGACTTTCAGGACGTACTTACAAATTAGTCGGTCAACTTCTGGAACA
TGCACAAACACAAGCTGCGCGATAAATTATCAGAAGTACTTGTTGCAAGT
TGTCATCCCTGGAAATTGCTTCTTTAATTAGATTCAGAAGAGAGCAATTC
TATTGATAAATCATTTCATTTCCATTTTTCTTTCAAATTTTGGAAGAGTT
TATGATTATGTCCTCGGTGTTTGCTGTAACTTTGTTTAATTATTCAAAGA
TTAACATGTATCTTTCTGAAAGAGGTCATTCTTGTGAAATTTGTTTGAA
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