CV885150

Overview
NameCV885150
Unique NameCV885150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885150_ssr443 microsatellite CV885150_ssr443:443..454. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885150 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.549e-30
Identity = 68/107 (63.55%), Postives = 75/107 (70.09%), Query Frame = -2
Query:  256 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 576
            NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+                           KDDQK+VD  L+KAIE VP+LKAYLGARFSL+AGMKPHELVF
Sbjct:  128 NGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234          
BLAST of CV885150 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 69/107 (64.49%), Postives = 74/107 (69.16%), Query Frame = -2
Query:  256 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 576
            NGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                            KDDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:  127 NGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CV885150 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 69/107 (64.49%), Postives = 74/107 (69.16%), Query Frame = -2
Query:  256 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 576
            NGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                            KDDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:  127 NGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CV885150 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.801e-28
Identity = 66/107 (61.68%), Postives = 73/107 (68.22%), Query Frame = -2
Query:  256 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 576
            NGVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K                            K+DQK+VDA LIK+IEAVP+LK YLGARFSL  GMKPHELVF
Sbjct:  127 NGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233          
BLAST of CV885150 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.523e-16
Identity = 51/107 (47.66%), Postives = 58/107 (54.21%), Query Frame = -2
Query:  256 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 576
            NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  LI  I+  P LK YL A FSL+ G KPH L F
Sbjct:   72 NGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176          
BLAST of CV885150 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 83.5741 bits (205), Expect = 7.848e-16
Identity = 50/107 (46.73%), Postives = 58/107 (54.21%), Query Frame = -2
Query:  256 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 576
            NGVPLRRVN  YVI TSTKV + GVNV+KF+ +YFAKE                            +DQK VD  L+  I+  P LK YL A FSL+ G KPH L F
Sbjct:   72 NGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176          
BLAST of CV885150 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.133e-14
Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = -2
Query:  256 NGVPLRRVNQSYVIGTST-KVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 576
            NGVP+RRVN  YVI TS  K+D+SGV+V+KF   YFAK+                             DQK+VDA L+ AI+A+P++K YL A F+L  G +PH + F
Sbjct:   89 NGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195          
BLAST of CV885150 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 72.4034 bits (176), Expect = 1.809e-12
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = -2
Query:  256 NGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 576
            N VPLRR +Q +VI TSTKVDIS V + K   D YF K+                            D QK+VD+ ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:  192 NRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEITEQRKAD-QKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298          
BLAST of CV885150 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.363e-12
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = -2
Query:  256 NGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 576
            N VPLRR +Q +VI TSTKVDIS V + K   D YF K+                            D QK+VD  ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:  190 NRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEITEQRKAD-QKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296          
BLAST of CV885150 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 5.264e-12
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  256 NGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 576
            N VPLRR +Q +VI TSTK+DISGV + +   D YF K+                            D QK+VD+ +++ I+AVP L+ YL + F+L  G+ PH+LVF
Sbjct:  178 NRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVD-QKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284          
The following BLAST results are available for this feature:
BLAST of CV885150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RL6_MESCR9.549e-3063.5560S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL63_ARATH1.247e-2964.4960S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH1.247e-2964.4960S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL61_ARATH1.801e-2861.6860S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL6A_YEAST3.523e-1647.6660S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6B_YEAST7.848e-1646.7360S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6_SCHPO1.133e-1442.5960S ribosomal protein L6 OS=Schizosaccharomyces po... [more]
RL6_RAT1.809e-1241.6760S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]
RL6_MOUSE2.363e-1241.6760S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_PIG5.264e-1238.8960S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885150 ID=CV885150; Name=CV885150; organism=Citrus sinensis; type=EST; length=580bp
CTTTTACAAATGTCACTCCATAATCTAAGTAACCAAAAGGAAGTTAAACA
GAAACACATAAAAAGGAAAGGTCACAGAGTATATATCAGTAATCAATTGT
ACTTTAAGAAAAGCATTTCATTTGCCTAACATCATACCAAAATTTAGATG
TCTGATCCCATGAAACAAAGATTACAACTGCTAAAATAAATTTCAAACAA
AACATAACAAGTAGGAAAAAGCAAAGCAATCCTAAATTGTTTCAACATGT
TTTCAGAAGACAAGTTCATGAGGTTTCATGCCGGCCCTGAGGGAAAACCT
AGCACCAAGGTAAGCCTTCAAGTCTGGAACAGCTTCAATGGCCTTGATCA
ATGGTGCATCAACAGACTTCTGATCATCCTTCTTCTCCTGAGGAAGCGAC
TTCTTCTCCTCTTTCTCTGACTCAAAGAACTCATTCTCTCCTTTCTTCTT
CTTCCTCTCGACTTCCTTGGCAAAATACTTATCATCAAACTTATCCACAT
TCACTCCGGAGATATCAACTTTGGTAGAAGTTCCAATCACGTAAGACTGG
TTCACACGTCGTAAAGGAACACCATTGCCT
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