CV885144

Overview
NameCV885144
Unique NameCV885144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12464 contig Csv1_Contig12464:442..1088. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885144 vs. ExPASy Swiss-Prot
Match: RK15_ARATH (50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.354e-57
Identity = 110/127 (86.61%), Postives = 118/127 (92.91%), Query Frame = 1
Query:    4 ASFRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAEEYFAKKR 384
            A +RR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EGDEVSLETLK+KGLINPSGRERKLPLKILG GELS KL FKARAFST AKEKLEA+GCTLTVLPGRKKWVKPSVAKN ARA+EYFAKKR
Sbjct:  136 ALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEKLEASGCTLTVLPGRKKWVKPSVAKNQARADEYFAKKR 262          
BLAST of CV885144 vs. ExPASy Swiss-Prot
Match: RK15_PEA (50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum GN=RPL15 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.121e-54
Identity = 107/125 (85.60%), Postives = 113/125 (90.40%), Query Frame = 1
Query:   10 FRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAEEYFAKKR 384
            +RR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +INPSGRERKLPLKIL DGELSKKL  KA AFSTSAKEKLE AGC+L VLPGRKKWVKPSVAKNLARAEEYFAKKR
Sbjct:  123 YRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSVAKNLARAEEYFAKKR 247          
BLAST of CV885144 vs. ExPASy Swiss-Prot
Match: RL15_RUBXD (50S ribosomal protein L15 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplO PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.916e-11
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   13 RRIPKLRGIAGGMHAGL-PK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 306
            RR+P+L+G A G H    PK Y PVN+ ++ A   +EGD + L+ L+  GLI    ++    +KILGDGE+ + +  +A AFS +A+EK+EAAG    VL
Sbjct:   59 RRLPRLKGEARGRHTPAHPKVYDPVNVGELAA---VEGDTIGLDELRAAGLIR---KKADTLVKILGDGEIDRPVTVRAHAFSRAAREKIEAAGGRAEVL 152          
BLAST of CV885144 vs. ExPASy Swiss-Prot
Match: RL15_CORDI (50S ribosomal protein L15 OS=Corynebacterium diphtheriae GN=rplO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   16 RIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLT 300
            R+PKL+G           Y  VN+ D+E A F +G E+++  +  KGL+ P     K P+K+LG+GE+S KLN  A  FS SA EK+EAAG ++T
Sbjct:   61 RLPKLKGFKNPAKV---YYQVVNVSDLEKA-FPQGGEIAVADIVAKGLVRP-----KQPVKVLGNGEISVKLNVTATKFSKSAVEKIEAAGGSVT 146          
The following BLAST results are available for this feature:
BLAST of CV885144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RK15_ARATH1.354e-5786.6150S ribosomal protein L15, chloroplastic OS=Arabid... [more]
RK15_PEA3.121e-5485.6050S ribosomal protein L15, chloroplastic (Fragment... [more]
RL15_RUBXD1.916e-1143.0050S ribosomal protein L15 OS=Rubrobacter xylanophi... [more]
RL15_CORDI5.574e-1143.1650S ribosomal protein L15 OS=Corynebacterium dipht... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885144 ID=CV885144; Name=CV885144; organism=Citrus sinensis; type=EST; length=647bp
AATGCCTCTTTTCGTCGAATTCCTAAGCTCCGTGGGATTGCCGGAGGTAT
GCATGCTGGGTTACCTAAGTATGTCCCTGTTAACTTGAAAGACATAGAAG
CAGCTGGTTTTCTAGAGGGGGATGAAGTCTCACTAGAGACTTTGAAGAAG
AAGGGCTTGATCAATCCCTCAGGAAGAGAAAGGAAACTGCCTTTAAAGAT
TCTTGGTGATGGAGAATTAAGCAAGAAGCTGAACTTCAAGGCTCGTGCCT
TCTCTACATCAGCAAAGGAGAAGCTTGAAGCTGCAGGCTGTACCCTCACT
GTCTTACCTGGCCGAAAGAAGTGGGTGAAACCATCAGTAGCTAAGAACCT
TGCACGAGCTGAAGAATACTTCGCCAAGAAGAGAGCTGCTGCAGCTGCAT
CCGATTCAACTTCAGCTTGAACCACTTGGTTTTTTTCACTCACTGTAACT
AAGTAGAGCCATTGAATTGTCTTCGATTCTTTTTCTCTGGTTTTAGGTTT
TCGGGGTAGCGAAATGAGAGGAGGATGTCTATAGCTGTAATTTCTGGAAT
TTGTCTCTTCTTTGTATCCCCTCCCTTTTAAAAATTCAGCTAAACTCTCA
ATGTTCTGATTCTCATGTTACTTAGCTGGAAAGCCAAATCTCAGCCT
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