CV885138

Overview
NameCV885138
Unique NameCV885138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9039 contig Csv1_Contig9039:141..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KN1_SOLLC (Homeotic protein knotted-1 OS=Solanum lycopersicum GN=KN1 PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 2.622e-104
Identity = 184/233 (78.97%), Postives = 201/233 (86.27%), Query Frame = -3
Query:  179 ARLAAARQEFESRQRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAASLYMDGHYMADGPYRLG 877
            ARL+A RQEFE+RQR SL  RD  +KDPELDQFMEAYYDMLVKYREELTRP+QEAM+F+++IE QLNML N PVRIFNS D  KCEGVGSSEEDQ+NSGGETELPEIDPRAEDRELKNHLLRKYSGY                  K+ARQKL+ WWELHYKWPYPSE+EKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQ+AA+LYM+GHYM +GP+RLG
Sbjct:  125 ARLSAVRQEFEARQRRSLTDRD-VSKDPELDQFMEAYYDMLVKYREELTRPLQEAMEFMQKIEAQLNMLGNAPVRIFNSED--KCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLITWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAAALYMEGHYMGEGPFRLG 354          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNAP2_MALDO (Homeobox protein knotted-1-like 2 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.699e-103
Identity = 189/238 (79.41%), Postives = 205/238 (86.13%), Query Frame = -3
Query:  176 ARLAAARQEFESRQRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNG----PVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAASLYMDGHYMADGPYRLGP 877
            ARL+ ARQEFE+RQRSS  SR+ T+KDPELDQFMEAYYDMLVKYREELTRPIQEAMDF+RRIETQLNML N     P+RIF+ ++D KCEG+GSSEE+QENSGGETE+PEIDPRAEDRELKNHLLRKYSGY                  K+ARQKLL+WWELHYKWPYPSE+EKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAA LYMDGHY+ DG YRLGP
Sbjct:  163 ARLSVARQEFEARQRSSGTSRE-TSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLGNNNNAPPLRIFSPSED-KCEGIGSSEEEQENSGGETEVPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAA-LYMDGHYIGDGHYRLGP 397          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNAP1_MALDO (Homeobox protein knotted-1-like 1 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 370.163 bits (949), Expect = 9.324e-102
Identity = 187/237 (78.90%), Postives = 202/237 (85.23%), Query Frame = -3
Query:  176 RLAAARQEFESRQRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNG----PVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAASLYMDGHYMADGPYRLGP 874
            RL+ ARQEFE+RQRSS  SR+ T+KDPELDQFMEAYYDMLVKYREELTRPIQEAMDF+RRIETQLNML N     P+RIF+ ++D KCEG+GSSE++QENSGGETE+PEIDPRAEDRELKNHLLRKYSGY                  KEARQKLL+WWELHYKWPYPSE+EKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAA LYMDGHY  D  YRLGP
Sbjct:  165 RLSVARQEFEARQRSSGTSRE-TSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLGNNNNAPPLRIFSPSED-KCEGIGSSEDEQENSGGETEVPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAA-LYMDGHYTGDVHYRLGP 398          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNAT1_ARATH (Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana GN=KNAT1 PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.883e-94
Identity = 171/234 (73.08%), Postives = 192/234 (82.05%), Query Frame = -3
Query:  176 RLAAARQEFESRQRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQE-NSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAASLYMDGHYMADGPYRLGP 874
            R+ AARQ+FE+RQ+ S  S  ++++DPELDQFMEAY DMLVKYREELTRPIQEAM+FIRRIE+QL+ML   P+ I N+ D  K + +GSS+E+QE NSGGETELPEIDPRAEDRELKNHLL+KYSGY                  KEARQKLL WWELHYKWPYPSE+EKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGL   + A+LYMDGHYM DGPYRLGP
Sbjct:  166 RITAARQDFEARQQRSTPSVSASSRDPELDQFMEAYCDMLVKYREELTRPIQEAMEFIRRIESQLSMLCQSPIHILNNPDG-KSDNMGSSDEEQENNSGGETELPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLQHPHHAALYMDGHYMGDGPYRLGP 398          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOS6_ORYSJ (Homeobox protein knotted-1-like 6 OS=Oryza sativa subsp. japonica GN=OSH1 PE=2 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 6.502e-79
Identity = 149/234 (63.68%), Postives = 175/234 (74.79%), Query Frame = -3
Query:  179 ARLAAARQEFESRQRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAASLYMDGHYMADGP-YRLG 877
            ARL A  Q+ E RQR++L    +   +PELDQFMEAY++MLVKYREELTRP+QEAM+F+RR+ETQLN LS     + N          GSSEEDQE SGGETELPEID    D+ELK+HLL+KYSGY                  K+ARQ+LLNWWELHYKWPYPSE++KVALAESTGLD KQINNWFINQRKRHWKPS++MQF++MDG HP NAA+ YMDGH++ DG  YRLG
Sbjct:  135 ARLTAVAQDLELRQRTALGVLGAAT-EPELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNTLSISGRSLRNILSS------GSSEEDQEGSGGETELPEIDAHGVDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQQLLNWWELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSDEMQFVMMDGYHPTNAAAFYMDGHFINDGGLYRLG 361          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: RSH1_MAIZE (Homeobox protein rough sheath 1 OS=Zea mays GN=RS1 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.226e-77
Identity = 143/212 (67.45%), Postives = 165/212 (77.83%), Query Frame = -3
Query:  179 KDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNG----PVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAASLYMDGHYMADGPYRLG 802
            +DPELDQFMEAY +MLVKYREELTRPI EAM+F++R+E QL+ +S G      R+  S  D K EGVGSSE+D + +G E + PEIDPRAED+ELK  LL+KYSGY                  KEARQKLL+WWELHYKWPYPSETEK+ALAESTGLDQKQINNWFINQRKRHWKPSEDM F++M+G HPQNAA+LYMDG +M DG YRLG
Sbjct:  141 RDPELDQFMEAYCNMLVKYREELTRPIDEAMEFLKRVEAQLDCISGGGGSSSARL--SLADGKSEGVGSSEDDMDPNGRENDPPEIDPRAEDKELKYQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSEDMPFVMMEGFHPQNAAALYMDGPFMRDGMYRLG 350          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOSC_ORYSJ (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. japonica GN=OSH15 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.356e-76
Identity = 147/239 (61.51%), Postives = 174/239 (72.80%), Query Frame = -3
Query:  179 RLAAARQEFESRQRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGP-------VRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAASLYMDGHYMADGPYRLG 874
            RL A   + ++R     ++RD     PELDQFMEAY +ML KYREELTRPI EAM+F++R+E+QL+ ++ G         R+  +  D K E VGSSE+D + SG E E PEIDPRAED+ELK  LL+KYSGY                  KEARQKLL+WWELHYKWPYPSETEK+ALAESTGLDQKQINNWFINQRKRHWKPSEDM F++M+G HPQNAA+LYMDG +MADG YRLG
Sbjct:  123 RLTATAAKLDARPPGRHDARD-----PELDQFMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLA--DGKSECVGSSEDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSEDMPFVMMEGFHPQNAAALYMDGPFMADGMYRLG 354          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOSC_ORYSI (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica GN=OSH15 PE=2 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 1.356e-76
Identity = 147/239 (61.51%), Postives = 174/239 (72.80%), Query Frame = -3
Query:  179 RLAAARQEFESRQRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGP-------VRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAASLYMDGHYMADGPYRLG 874
            RL A   + ++R     ++RD     PELDQFMEAY +ML KYREELTRPI EAM+F++R+E+QL+ ++ G         R+  +  D K E VGSSE+D + SG E E PEIDPRAED+ELK  LL+KYSGY                  KEARQKLL+WWELHYKWPYPSETEK+ALAESTGLDQKQINNWFINQRKRHWKPSEDM F++M+G HPQNAA+LYMDG +MADG YRLG
Sbjct:  123 RLTATAAKLDARPPGRHDARD-----PELDQFMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLA--DGKSECVGSSEDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSEDMPFVMMEGFHPQNAAALYMDGPFMADGMYRLG 354          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KNOX3_HORVU (Homeobox protein KNOX3 OS=Hordeum vulgare GN=KNOX3 PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.788e-76
Identity = 146/234 (62.39%), Postives = 172/234 (73.50%), Query Frame = -3
Query:  179 ARLAAARQEFESRQRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAASLYMDGHYMAD-GPYRLG 877
            ARL A  Q+ E RQR++L     T  +PELDQFMEAY++MLVKYREELTRP+QEAM+F+RR+ETQLN LS     + N          GSSEEDQE SGGETELPEID    D+ELK+HLL+KYSGY                  KEARQ+LL+WWE+HYKWPYPSE++KVALAESTGLD KQINNWFINQRKRHWKP+++MQF++MD  HP NAA  YMDGH++ D G YR G
Sbjct:  139 ARLTAVAQDLELRQRTALGGL-GTATEPELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNSLSISGRSLRNILS------TGSSEEDQEGSGGETELPEIDAHGVDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQQLLSWWEMHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPTDEMQFVMMDAYHPPNAA-FYMDGHFVNDSGLYRFG 364          
BLAST of CV885138 vs. ExPASy Swiss-Prot
Match: KN1_MAIZE (Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 5.332e-73
Identity = 142/234 (60.68%), Postives = 169/234 (72.22%), Query Frame = -3
Query:  179 ARLAAARQEFESRQRSSLNSRDSTNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIFNSTDDQKCEGVGSSEEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYXXXXXXXXXXXXXXXXXXKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAASLYMDGHYMADGP-YRLG 877
            ARL    QE E+RQR++L    +   +PELDQFMEAY++MLVK+REELTRP+QEAM+F+RR+E+QLN LS     + N          GSSEEDQE SGGETELPE+D    D+ELK+HLL+KYSGY                  KEARQ+LL+WW+ HYKWPYPSET+KVALAESTGLD KQINNWFINQRKRHWKPSE+M  ++MDG H  NA   YMDGH++ DG  YRLG
Sbjct:  135 ARLTEIAQEVEARQRTALGGLAAAT-EPELDQFMEAYHEMLVKFREELTRPLQEAMEFMRRVESQLNSLSISGRSLRNILSS------GSSEEDQEGSGGETELPEVDAHGVDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQQLLSWWDQHYKWPYPSETQKVALAESTGLDLKQINNWFINQRKRHWKPSEEMHHLMMDGYHTTNA--FYMDGHFINDGGLYRLG 359          
The following BLAST results are available for this feature:
BLAST of CV885138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
KN1_SOLLC2.622e-10478.97Homeotic protein knotted-1 OS=Solanum lycopersicum... [more]
KNAP2_MALDO1.699e-10379.41Homeobox protein knotted-1-like 2 OS=Malus domesti... [more]
KNAP1_MALDO9.324e-10278.90Homeobox protein knotted-1-like 1 OS=Malus domesti... [more]
KNAT1_ARATH1.883e-9473.08Homeobox protein knotted-1-like 1 OS=Arabidopsis t... [more]
KNOS6_ORYSJ6.502e-7963.68Homeobox protein knotted-1-like 6 OS=Oryza sativa ... [more]
RSH1_MAIZE1.226e-7767.45Homeobox protein rough sheath 1 OS=Zea mays GN=RS1... [more]
KNOSC_ORYSJ1.356e-7661.51Homeobox protein knotted-1-like 12 OS=Oryza sativa... [more]
KNOSC_ORYSI1.356e-7661.51Homeobox protein knotted-1-like 12 OS=Oryza sativa... [more]
KNOX3_HORVU8.788e-7662.39Homeobox protein KNOX3 OS=Hordeum vulgare GN=KNOX3... [more]
KN1_MAIZE5.332e-7360.68Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885138 ID=CV885138; Name=CV885138; organism=Citrus sinensis; type=EST; length=909bp
ATTGATTTCTGAATAATAAGGTCAGTTGTAGGATAATACCAAATTCTCAC
AGCACTTAAAATAGTACATACGTAGCATTAAGACTAACACTTTGATACTT
AACCACTAGCAAACAGCAGCACTATACCGTCCTATTTCTCTCACATAAAA
TTTGTATGTGAGCTGGCCATGATCATGGTCCCAAACGGTATGGACCATCA
GCCATGTAGTGTCCATCCATATAAAGAGAAGCAGCATTCTGAGGATGAAG
GCCATCCATCACCATGAATTGCATATCTTCAGAAGGTTTCCAGTGCCGCT
TCCTTTGGTTGATAAACCAGTTGTTTATCTGTTTCTGATCCAAGCCAGTT
GATTCAGCCAATGCCACCTTCTCTGTCTCCGAAGGATAAGGCCATTTATA
GTGTAATTCCCACCAGTTAAGTAGCTTTTGCCTGGCTTCTTTGGGTAGTT
TCCCTTTCTTCTTTTTCTTGGACAGTTCTTGTTTGAGGCTACTTAAGTAG
CCACTGTATTTCCTCAATAGGTGGTTCTTCAGTTCTCGATCTTCAGCCCG
GGGATCAATTTCAGGTAACTCTGTCTCTCCACCACTATTTTCTTGATCTT
CTTCGGAGGAGCCAACGCCTTCACATTTCTGATCATCAGTGGAGTTGAAG
ATCCGAACGGGGCCATTGCTAAGCATATTAAGCTGAGTTTCGATCCGCCG
GATGAAATCCATGGCTTCTTGTATTGGCCTTGTTAGCTCTTCCCGATATT
TCACTAGCATGTCGTAATAAGCCTCCATAAATTGATCGAGTTCTGGGTCT
TTATTAGTAGAGTCTCTCGAATTCAACGACGATCGCTGCCTTGACTCGAA
CTCCTGTCTAGCAGCTGCAAGCCGAGCCCAACTTCCGGCGGAACTTCGAC
CTTTTGGCA
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