CV885137

Overview
NameCV885137
Unique NameCV885137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885137_ssr623 microsatellite CV885137_ssr623:623..632. BLAST: Citrus ESTs to Prunus persica proteins V1
CV885137_ssr707 microsatellite CV885137_ssr707:707..721. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CV885137 vs. ExPASy Swiss-Prot
Match: KNAT1_ARATH (Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana GN=KNAT1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12
Identity = 53/172 (30.81%), Postives = 78/172 (45.35%), Query Frame = 2 
Query:  422 MEGYNSLNENTTPRGNFLYS---------SSQVVGSSAYGRASDGQMPIRSNSSNSFH-------------LQSGGSTCFQSERAXXXXXXXXXXXIVKTEASTSQLIYSLNMMRXXXXXXXXXXXXXXXXXXXXAIKAKIISHPQYSSLLEAYVDCQKVGAPPEVVARLAA 871
            ME Y   N  T  R +FLYS         ++    ++     S    P  +N++N+ H             L      CF+S+              VK+EAS+S++ +   +MR                    A+KAKII+HP YS+LL+AY+DCQK+GAPP+VV R+ A
Sbjct:    1 MEEYQHDNSTTPQRVSFLYSPISSSNKNDNTSDTNNNNNNNNSSNYGPGYNNTNNNNHHHQHMLFPHMSSLLPQTTENCFRSDHDQPNNNNNPS---VKSEASSSRINHYSMLMRAIHNTQEANNNNNDNVSDVEAMKAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITA 169
The following BLAST results are available for this feature:
BLAST of CV885137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KNAT1_ARATH3.759e-1230.81Homeobox protein knotted-1-like 1 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012H04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885137 ID=CV885137; Name=CV885137; organism=Citrus sinensis; type=EST; length=873bp
ATTTCACTTTTCTAATTAAGGGAAAAAAAAAAAGGTCTTGTCAACCACTC
AAGACAAGCAGCCGTTGCCGGTTCCGGCTAAGCAGCACCTTCTTCCTCAG
TTCCCAGCGTCATGCGAGAACAATTCTCACTCTTTATATATTGATTTAAT
CTTTATATTTTTTTCGATCTATAACATGCACAAGTCCTGGTGCAATTTCA
CTTCAAGACCTCCTGGATAGACAGACTGCCGTTTCATTGCCAAAATTGCC
CAAATCAGTAGATTCAAAATGGCAATGAAAAATCTCCTTTTTTCCTTTTG
GTATAAATGACAAGTCTATACTCTCTAGGGTTTCTGTTTGTTTCCACTAA
CAAGTCCTACTGCTTGGGCTTGCTTTAGGGCTTCTATTTTGTTTCTTTGT
TTCTTTTGGGTTTGTTGATAAATGGAGGGTTACAACAGTCTAAACGAGAA
CACGACTCCTAGAGGAAATTTCTTGTATTCGTCTTCTCAAGTTGTTGGAT
CATCAGCATATGGTCGAGCAAGTGATGGTCAGATGCCTATAAGAAGCAAC
AGCAGCAACAGCTTTCACCTACAATCAGGTGGCAGTACTTGTTTCCAATC
TGAGCGGGCACCGCCGCCTGAAACACACACACATCATCCGACGATTGTGA
AAACTGAAGCCAGCACTTCGCAGCTTATCTACTCTCTTAATATGATGAGA
GAAGGGCATCATCATCATCATCAATCACAGCAAGAAGGAAATGAGAGCTC
TGAAACAGAAGCTATTAAAGCCAAGATCATCTCCCATCCTCAGTATTCCA
GCCTTTTGGAAGCCTACGTGGATTGCCAAAAGGTCGGAGCTCCGCCTGAA
GTTGTGGCTCGGCTTGCAGCTGC
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