CV885127
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 4.090e-67 Identity = 128/178 (71.91%), Postives = 149/178 (83.71%), Query Frame = 2 Query: 281 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 ARR+Y+GNIPRN++NDEL IV+EHGA+E AEV+YDKY+GRSRRF FV MKTVEDANAVIEKLN TEIGGR+IKVNITEKPL +D++ QAEDS FV+SPYKVY+GNLAKTVT+E+LK FSEKG+VL AKV R PGTSKS+GFGFV+F LNNS+LE Q+IRVNKA Sbjct: 83 ARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 9.847e-29 Identity = 67/179 (37.43%), Postives = 109/179 (60.89%), Query Frame = 2 Query: 287 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 R+Y+GN+P ++ + +L++I E G V E++YD+ T RSR FAFV M +VE+A I +G+++GGR +KVN E P +V + +++ FVDSP+K+YV NL+ +TS+ L+ F+++ +SAKV+ + +S GFGF+TF +N LE + +R+N A Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.127e-24 Identity = 72/196 (36.73%), Postives = 100/196 (51.02%), Query Frame = 2 Query: 287 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN--------------------FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 ++++GN+P ++D+ L + + G VE EVIYDK TGRSR F FV M T E+ A ++ NG EI GR I+VN P + + S N VDS +VYVGNL+ V LK+ FSE+G V+ AKV+ + +S GFGFVT+ LN L+ + IRV+ A Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283 HSP 2 Score: 68.1662 bits (165), Expect = 7.090e-11 Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 2 Query: 281 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 520 + RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FV + ++ N I+ LNG ++ GR I+V+ E+ Sbjct: 206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEE 285
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.471e-24 Identity = 66/177 (37.29%), Postives = 99/177 (55.93%), Query Frame = 2 Query: 287 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLL-QAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 ++++GN+P + D+ L ++ + G VE EVIYDK TGRSR F FV M + E+ A ++ NG E+ GR ++VN P + + S + DS +VYVGNLA V + L+ FSE+G+V+ AKV+ + +S GFGFVT+ L+ L + IRV+ A Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264 HSP 2 Score: 71.633 bits (174), Expect = 6.413e-12 Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 2 Query: 281 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 517 + RVY+GN+ +D D L + E G V A+V+YD+ +GRSR F FV + E+ N IE L+G ++ GR I+V+ E Sbjct: 187 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.510e-24 Identity = 66/190 (34.74%), Postives = 105/190 (55.26%), Query Frame = 2 Query: 287 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF--------------VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 ++++GN+P N+D+ +L ++ + G VE EVIYDK TGRSR F FV M +V + A ++ NG E+ GR ++VN P + D + S+F S +VYVGNL+ V L+ FSE+G+V+ A+V+ + +S GFGFVT+ L+ + L+ ++IRV++A Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRED-GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.592e-24 Identity = 71/196 (36.22%), Postives = 100/196 (51.02%), Query Frame = 2 Query: 287 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN--------------------FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 ++++GN+P ++D+ L + + G VE EVIYDK +GRSR F FV M T E+ A ++ NG EI GR I+VN P + + S N VDS +VYVGNL+ V LK+ FSE+G V+ AKV+ + +S GFGFVT+ LN L+ + IRV+ A Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284 HSP 2 Score: 68.5514 bits (166), Expect = 5.429e-11 Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 2 Query: 281 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 520 + RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FV + ++ N I+ LNG ++ GR I+V+ E+ Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEE 286
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.592e-24 Identity = 68/176 (38.64%), Postives = 102/176 (57.95%), Query Frame = 2 Query: 287 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 ++++GN+P ++D+++L I G VE AEVIY++ T RSR F FV M TVE+A +E LNG ++ GR++ VN P + +A +F S +VYVGNL V + L++ FSE G+V+SA+V+ T +S GFGFVT L+ L+ + +RVN A Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAAPRGSPE----RAPRGDFEPS-CRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225 HSP 2 Score: 74.3294 bits (181), Expect = 9.893e-13 Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2 Query: 287 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 520 RVY+GN+P ++D L ++ EHG V A V+ D+ TGRSR F FV M + + N I L+G + GR ++VN+ E+ Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.627e-23 Identity = 68/185 (36.76%), Postives = 102/185 (55.14%), Query Frame = 2 Query: 287 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF---------VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 ++++GN+ + D+ L ++ + G VE EVIYDK TGRSR F FV M + E+ A ++ NG E+ GR ++VN P + + S E+S+F DS +VYVGNLA V + L+ FSE+G+V+ AKV+ + +S GFGFVT+ L+ L + IRV+ A Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF--RENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270 HSP 2 Score: 71.633 bits (174), Expect = 6.413e-12 Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 2 Query: 281 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 517 + RVY+GN+ +D D L + E G V A+V+YD+ +GRSR F FV + E+ N IE L+G ++ GR I+V+ E Sbjct: 193 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22 Identity = 61/176 (34.66%), Postives = 99/176 (56.25%), Query Frame = 2 Query: 287 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 ++++GN+P ++D++ L ++ ++ G VE AEVIY++ T +SR F FV M TVE+A +E N ++ GR + VN + + + E S Y++YVGN+ + L++ FSE G+V+SA+V+ T +S GFGFVT L+ L+ + IRVN A Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQS------YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306 HSP 2 Score: 75.485 bits (184), Expect = 4.441e-13 Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 2 Query: 287 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 517 R+Y+GNIP ID+ L ++ EHG V A V+YD+ TGRSR F FV M + + + I L+G + GR I+VN+ E Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
BLAST of CV885127 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.166e-21 Identity = 60/176 (34.09%), Postives = 98/176 (55.68%), Query Frame = 2 Query: 287 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLERQRIRVNKA 814 ++++GN+P +ID++ L ++ Q+ G VE AEVIY++ T RSR F FV M TVE+A+ +E + ++ GR + VN + + + Y++YVGN+ + L++ FSE G+V+SA+V+ + +S GFGFVT L+ L+ + IRVN A Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERA------PRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267 HSP 2 Score: 72.4034 bits (176), Expect = 3.759e-12 Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 2 Query: 287 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 520 R+Y+GNIP +ID+ L ++ EHG V A V++D+ +GRSR F FV M + + + I L+G + GR I+VN E+ Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEE 269 The following BLAST results are available for this feature:
BLAST of CV885127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885127 ID=CV885127; Name=CV885127; organism=Citrus sinensis; type=EST; length=871bpback to top |