EY665361

Overview
NameEY665361
Unique NameEY665361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1001
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665361_ssr95 microsatellite EY665361_ssr95:95..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY665361 vs. ExPASy Swiss-Prot
Match: COPT1_ARATH (Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.491e-18
Identity = 50/104 (48.08%), Postives = 66/104 (63.46%), Query Frame = 2 
Query:  269 FFWGKNSEILFSGWPGTSSGMYXXXXXXXXXXXXXXXXXSHCKLMK---PDANHVAAGLIQTLLHAIRVGLAFLVMLAIMSFNESVFWVLLLVY-FWIFIFGSR 568
            FFWGKN+E+LFSGWPGTSSGMY                 +H  L++    D+ + AAGLIQT ++ +R+GLA+LVMLA+MSFN  VF V L  +     +FGS+
Sbjct:   46 FFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQ 149
The following BLAST results are available for this feature:
BLAST of EY665361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COPT1_ARATH1.491e-1848.08Copper transporter 1 OS=Arabidopsis thaliana GN=CO... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-A06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665361 ID=EY665361; Name=EY665361; organism=Citrus sinensis; type=EST; length=1001bp
TCGGGAACGGGGTCCGGGAAATTCCCGGGGGTCGAACCCACGNCGNTCCG
NCGGTACGCGTTGGGNTTACNNCTCAAAGCACCGCAATGAAAGAAAAGAA
AGAAAGAAAACTTTCAATAAAAGAACTCCCAAGCAGAGATCAGCAAACAT
TAGCAAAGCCATGGATGGCATGCATCATGATCATGGAAGCATGTCACCGC
CCATGTCAATGAACAACACCAATAACACAGGGACGATGATGCATCATCAC
AACATGATGCACATGACGTTTTTCTGGGGCAAGAACTCTGAAATTCTCTT
CTCAGGCTGGCCTGGAACAAGCTCAGGAATGTATGCCTTAGCTTTGATTG
TTGTGTTTGTGTTGGCTGTGTTGGTTGAGTGGCTCTCTCACTGCAAATTG
ATGAAGCCTGATGCAAATCATGTGGCTGCTGGTTTGATTCAGACTCTTTT
ACATGCAATCAGGGTTGGGCTTGCTTTCTTGGTGATGCTTGCTATTATGT
CCTTTAATGAGAGTGTGTTTTGGGTGCTGTTGCTGGTCTACTTTTGGATC
TTTATTTTTGGCAGCAGGTTAGTNNTNTTTCTCNCCCCTTCCNAAACCTC
TGATCTTCTCCCTGAGTTGTTGAATATTTAAAACTAATACAAAAATAAGT
ATGTCTGAGTTTGCTTTGAATTAACTGGAACCCTAATTCTTTTTTTTCCT
TCCCTAACTTCTGTAAACGGATAGAAAATGGGTTTGGGGGGAAAAAAAAA
AAATAAAATCAATAAAGACAATAACAACAACGGGGGCGCCCAAAGACTAT
TTAACCGGGGGGGACTTACTTTTTAGGCCAATTTTTCGGGCTTTTAACCG
TAGGGAAACGGTAACAAAACCTTGACCCCCTCTCCGGGGAAAAAACGCCC
ATCTCAAAATACCACAAGAAGGCCGGGACAAAACGGGGGTGTAGNAGAAT
TAACACAACCTTTTTTCTTTCTGGGTGCTGATGGCTTTGAATGTACCCCA
C
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