EY665355

Overview
NameEY665355
Unique NameEY665355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1020
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665355_ssr1 microsatellite EY665355_ssr1:1..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY665355 vs. ExPASy Swiss-Prot
Match: PH1_ARATH (Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 6.993e-48
Identity = 91/144 (63.19%), Postives = 110/144 (76.39%), Query Frame = 3 
Query:   78 MENIWRALSGQDPNPEDYTGIEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNI-TPGSTPRGVIPVGTCLTVTGAEDLLNKPFAFELHGGIHDVLCGGY*EGKKRSGIISMGRAIVQHTRSENEPKIFDYENQ 506
            ME+IWR  +GQDP+ EDY GIEFWSNPERSGWLTKQGDYIKTWRRRWF+LK+GKL WFKD       GSTPRGVI VG CLTV GAED++NKPFAFEL  G + +      E +K   I S+GR+IVQH+RS  + ++ DY+++
Sbjct:    1 MESIWRIATGQDPSREDYEGIEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKDQAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWINSIGRSIVQHSRSVTDSEVLDYDHR 144
The following BLAST results are available for this feature:
BLAST of EY665355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PH1_ARATH6.993e-4863.19Pleckstrin homology domain-containing protein 1 OS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-H12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665355 ID=EY665355; Name=EY665355; organism=Citrus sinensis; type=EST; length=1020bp
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAAAGAAAAGACGACTGCC
AATTGAGTAGAAAGTGCTTCAACTTCAATGGAGAATATCTGGCGTGCCTT
GTCGGGTCAGGACCCGAACCCGGAAGATTACACAGGCATAGAGTTCTGGT
CTAACCCGGAGCGATCGGGCTGGTTAACAAAGCAAGGCGACTACATCAAA
ACGTGGCGCCGCCGTTGGTTCATTCTGAAACAAGGCAAGCTCTTTTGGTT
CAAAGACTCCCACAACATCACCCCCGGCTCCACTCCACGTGGCGTCATCC
CTGTGGGCACTTGCCTCACCGTCACGGGCGCCGAGGACCTTCTGAACAAA
CCCTTCGCCTTCGAGCTGCACGGGGGAATACACGATGTACTTTGTGGCGG
ATACTGAGAAGGAAAAAAGAGGAGTGGAATAATTTCAATGGGCCGCGCGA
TTGTTCAACACACGCGCTCGGAGAATGAACCCAAGATCTTTGATTATGAA
AACCAAGTATATTGGGTTGGTAAATTTTCCATATCCTAAATATACAGGAA
CAAAAAAAAAACTGTGGAACCCTCGTTTACGCATATTGTGCCTTTTGGGG
GGATTTACGAACAATTAAAAGAAAAATACACGGTTTAGAAGAAAAAGAAA
GAAAAAGAGGGAGGGGCCTAGAAGAAGCGATCTAGTGTAGTGTTGTGACA
AGTACTGATGAACATAAATAGAAGAAACAAAAAATAGGGGCGCCAGAGTG
AAAAGTTCAGAGAGAATGACATGAAAGATATAAACTATAACAATCTAGAT
TACCAACTGATTCTACACTAATAATCAAAAGACTCCACATGATCTCAGCC
CGGACGTAGCAGTTACTAAATAGAAGAAAAATGCATATACTGAGATCCAA
TATAGCTAGAAGAAATCACACCAATAACGAGGAACAGCATGAAGATCAAG
AAAAGCGTAAATCGAAGGCGATAGCGGATACGACACGGACGCTCTCAGCG
AATATGAATTGGAGAAAAAA
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