CV885039

Overview
NameCV885039
Unique NameCV885039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885039_ssr768 microsatellite CV885039_ssr768:768..788. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.356e-66
Identity = 125/193 (64.77%), Postives = 144/193 (74.61%), Query Frame = -2
Query:  169 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFW-RTRIQKQIKQAE-TFXXXXXXXXXXXXXXXXSTAAYTMEDYSAPQY--PLNNNMDPHQAFPLDNMAPIPSEVNENYWSMEDLW 735
            MDK PCNS + EVRKGPWTMEEDLILIN+I+NHGEGVWN++A++AGLKRTGKSCRLRWLNYLRPDV+RGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKN+W RTRIQK IKQAE +F                  ++    D++   Y    N NM  +  +P       P+E N+ +WSMEDLW
Sbjct:    1 MDKKPCNSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQAEASFIGHINPEHSNEQASTSLLSSSCHADHAVESYSSSFNGNMGNNVQYP----NHFPTESNDYFWSMEDLW 189          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.994e-65
Identity = 131/208 (62.98%), Postives = 149/208 (71.63%), Query Frame = -2
Query:  154 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQAE-----TF---XXXXXXXXXXXXXXXXSTAAYTMEDYSAPQYPLNNNMDPHQAFPLDN--MAPIPS-EVNENYWSMEDLW---LYNGD 735
            MDK PCNSQ+ EVRKGPWTMEEDLILINYIANHGEGVWNSLA++AGLKRTGKSCRLRWLNYLRPDV+RGNITPEEQLLIMELHAKWGNRWSKIAK LPGRTDNEIKN+WRTRIQK ++Q +     TF                    +A   + D++A      ++  PH     D+   AP P+ + N+N WSMED W   L NGD
Sbjct:    1 MDKKPCNSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQGDQSSSTTFNNGQMNLDHSCNDQASSSQMSACGPVVDHTAVD---QSSYSPHSFNGNDHTFQAPFPTDQSNDNMWSMEDFWSMQLLNGD 205          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.005e-62
Identity = 131/217 (60.37%), Postives = 149/217 (68.66%), Query Frame = -2
Query:  154 NSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQAE--TFXXXXXXXXXXXXXXXXSTAAY--------TMEDYS-APQYPLNNNMDPHQAFPLDNMA----------PIPSEVN----ENYWSMEDLW----LYNGD 717
            +S EAEVRKGPWTMEEDLILINYIANHG+GVWNSLAK+AGLKRTGKSCRLRWLNYLRPDV+RGNITPEEQL+IMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK IKQ++  T                 ST+++         ME YS  P    + NM+    F   N +          P+P  V+    ENYW M+D+W    L NG+
Sbjct:   14 SSAEAEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDVTTTSSVGSHHSSEINDQAASTSSHNVFCTQDQAMETYSPTPTSYQHTNME----FNYGNYSAAAVTATVDYPVPMTVDDQTGENYWGMDDIWSSMHLLNGN 226          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.880e-39
Identity = 67/110 (60.91%), Postives = 92/110 (83.64%), Query Frame = -2
Query:  379 EAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 708
            + E RKGPWT +ED++L+N++   G+  W+ +AK +GL RTGKSCRLRW+NYL P +KRG +TP+E+ L++ELHAKWGNRWSKIA+ LPGRTDNEIKN+WRT ++K+ ++
Sbjct:    5 QEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 114          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.880e-39
Identity = 68/111 (61.26%), Postives = 92/111 (82.88%), Query Frame = -2
Query:  379 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 711
            QE   RKGPWT +ED++L+N++   G+  W+ +AK +GL RTGKSCRLRW+NYL P +KRG +TP+E+ L++ELHAKWGNRWSKIA+ LPGRTDNEIKN+WRT ++K+ ++
Sbjct:    3 QEEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 113          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.206e-39
Identity = 74/117 (63.25%), Postives = 91/117 (77.78%), Query Frame = -2
Query:  385 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 735
            M +TPC  ++  +++G WT EED +L NYIA HGEG W SL K AGL R GKSCRLRW+NYLR DVKRGNI+ EE+ +I++LHA  GNRWS IA HLPGRTDNEIKN+W + + +QI
Sbjct:    1 MGRTPC-CEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQI 116          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.218e-38
Identity = 71/117 (60.68%), Postives = 92/117 (78.63%), Query Frame = -2
Query:  385 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 735
            M ++PC  ++A + KG WT EED +L++YI  HGEG W SL +AAGL+R GKSCRLRW+NYLRPD+KRGN T EE  LI++LH+  GN+WS IA  LPGRTDNEIKN+W T I++++
Sbjct:    1 MGRSPC-CEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.591e-38
Identity = 71/117 (60.68%), Postives = 92/117 (78.63%), Query Frame = -2
Query:  385 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 735
            M + PC  ++  +++G WT EED IL NYI ++GEG W SL K AGLKR GKSCRLRW+NYLR D+KRGNITPEE+ L+++LH+  GNRWS IA HLPGRTDNEIKN+W + + +++
Sbjct:    1 MGRAPC-CEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRKL 116          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.047e-38
Identity = 73/117 (62.39%), Postives = 89/117 (76.07%), Query Frame = -2
Query:  385 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 735
            M ++PC  ++A   KG WT EED  LINYI  HGEG W SL KAAGL R GKSCRLRW+NYLRPD+KRGN T EE  +I++LH+  GN+WS IA  LPGRTDNEIKN+W T I++++
Sbjct:    1 MGRSPC-CEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKL 116          
BLAST of CV885039 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.898e-38
Identity = 70/117 (59.83%), Postives = 90/117 (76.92%), Query Frame = -2
Query:  385 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 735
            M ++PC  ++A   KG WT EED  L++YI NHGEG W SL K+AGL R GKSCRLRW+NYLRPD+KRGN T +E  +I++LH+  GN+WS IA  LPGRTDNEIKN+W T I++++
Sbjct:    1 MGRSPC-CEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116          
The following BLAST results are available for this feature:
BLAST of CV885039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB40_ANTMA2.356e-6664.77Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB05_ANTMA1.994e-6562.98Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB21_ARATH6.005e-6260.37Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB59_ARATH1.880e-3960.91Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYB48_ARATH1.880e-3961.26Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYBP_MAIZE3.206e-3963.25Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB3_ARATH1.218e-3860.68Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB12_ARATH1.591e-3860.68Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB30_ANTMA6.047e-3862.39Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB6_ARATH7.898e-3859.83Transcription repressor MYB6 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885039 ID=CV885039; Name=CV885039; organism=Citrus sinensis; type=EST; length=808bp
TTTTTTTAGATCTGCTATATCAACACATATATATAAGGTCCTATATATTA
CAAGCCATAGATATAACTAAAGATAAAAGTTTGAGCCCCGCTAATATTAT
AAGGATCCAAAATCATAACTCGAACCCATGCATATAAATAATCATGGTGC
TTAATCCCCGTTATATAACCAGAGATCCTCCATACTCCAGTAGTTTTCAT
TGACTTCAGAAGGAATAGGTGCCATATTATCTAATGGAAAAGCTTGATGA
GGATCCATATTATTGTTTAATGGATATTGTGGTGCTGAATAATCTTCCAT
GGTGTATGCAGCAGTGGACATTTGGCTTGAGCTTGCTTGCTCATTGGCCT
CTGAACTTTGCCCTGAAAATGTTTCTGCTTGCTTAATTTGCTTCTGGATT
CTGGTTCTCCAAAAATTCTTAATTTCATTGTCGGTCCTTCCTGGTAGATG
CTTTGCAATTTTGGACCACCTGTTTCCCCACTTGGCATGAAGCTCCATGA
TCAAAAGCTGCTCCTCTGGTGTAATATTCCCCCTCTTAACGTCCGGTCGG
AGATAGTTCAGCCACCTGAGCCGGCAACTCTTTCCGGTACGTTTTAGGCC
AGCTGCTTTAGCTAGTGAGTTCCAGACGCCTTCGCCGTGATTTGCTATAT
AGTTGATGAGGATCAAGTCTTCTTCCATGGTCCATGGCCCCTTTCGGACT
TCAGCTTCTTGAGAATTGCATGGAGTTTTATCCATCTCTTAATTTACATA
GAGAAATTAAGAGGAGGAGAAGAAGAAGAAGAAGAAGAAAGAAGAGGAAG
AGAAACCT
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