CV885035

Overview
NameCV885035
Unique NameCV885035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885035_ssr476 microsatellite CV885035_ssr476:476..487. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5380 contig Csv1_Contig5380:22..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 4.028e-72
Identity = 124/190 (65.26%), Postives = 154/190 (81.05%), Query Frame = -1
Query:  271 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWS 840
            ++WHVYSASAE+  +  P+YTLEMCMTGLD+K ASVF+KT  SSAA+MT+ SGIRKILP S+ICDF+F+PCGYSMN++EG  +STIHVTPEDGFSYASFEA+GYDF+ V L  L++RVL+CF+PAEFSVALH D +G++    F LD+KGY+CGE+ YE LG  GS++Y  F+      SPRS L CCWS
Sbjct:  161 QQWHVYSASAESAENTFPIYTLEMCMTGLDKKSASVFFKTQSSSAAVMTDASGIRKILPGSDICDFDFEPCGYSMNAVEGGTISTIHVTPEDGFSYASFEAMGYDFKDVNLDALIQRVLSCFQPAEFSVALHCDSIGEKLDSVFELDVKGYACGERSYEALGKGGSIMYCGFTSTGSCGSPRSTLLCCWS 350          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.531e-71
Identity = 124/190 (65.26%), Postives = 153/190 (80.53%), Query Frame = -1
Query:  271 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCWS 840
            ++WHVYSASAE+  +  P+YTLEMCMTGLD+K ASVF+KT  SSAA+MT+ SGIRKILP SEICDF+F+PCGYSMN++EG A+S IHVTPEDGFSYASFEA+GYDF+ V L  L++RVL+CF+PAEFSVALH D +G++    F LD+KGY+CGE+ YE L   GS++Y  F+      SPRS L CCWS
Sbjct:  161 QQWHVYSASAESAENTFPIYTLEMCMTGLDKKSASVFFKTQSSSAAVMTDASGIRKILPGSEICDFDFEPCGYSMNAVEGGAISPIHVTPEDGFSYASFEAMGYDFKDVNLDALIQRVLSCFQPAEFSVALHCDSIGEKLDSVFKLDVKGYACGERSYEGLNKGGSIMYCGFTSTGSCGSPRSTLLCCWS 350          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.609e-68
Identity = 126/190 (66.32%), Postives = 151/190 (79.47%), Query Frame = -1
Query:  274 TKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 843
            T++WHVYSASA +    +PVYTLEMCMTGLDR++ASVFYKT ESSAA MT  SGIRKILPKSEICDFEF+PCGYSMNSIEG AVSTIH+TPEDGF+YASFE+VGY+ + ++L PL+ERVLACF+PAEFSVALH+D+          +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct:  162 TQKWHVYSASAGSVQSNDPVYTLEMCMTGLDREKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVDVKGYSLAEWSPEEFGEGGSIVYQKFTRTPYCESPKSVLKGCW 351          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.027e-67
Identity = 126/189 (66.67%), Postives = 144/189 (76.19%), Query Frame = -1
Query:  274 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 840
            ++WHVYSAS  +    +P YTLEMCMTGLDR++ASVFYK+  SSAA+MT  SGIRKILP SEICDFEFDPCGYSMNSIE  A+STIHVTPEDGFSYASFEA GYD +   L  ++ERVLACF+P+EFSVA+H D+          L+LK YS  EKI EELG  GS+IY  F R D   SPRSILKCCW
Sbjct:  161 QKWHVYSASVGSEQSSDPTYTLEMCMTGLDREKASVFYKSESSSAALMTTRSGIRKILPDSEICDFEFDPCGYSMNSIEEAAISTIHVTPEDGFSYASFEAAGYDLKAQNLGMMIERVLACFQPSEFSVAVHCDVTCKSLEQICSLELKEYSLDEKINEELGLGGSIIYKKFLRIDACGSPRSILKCCW 349          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.341e-67
Identity = 124/190 (65.26%), Postives = 148/190 (77.89%), Query Frame = -1
Query:  274 TKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 843
            T++WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VGYD + ++L PL+ERVLACF+PAEFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F++     SP+S+LK CW
Sbjct:  162 TQKWHVYSASAGPVQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVGYDLKTMELGPLVERVLACFEPAEFSIALHADVATKLLERVCCVDVKGYSLAEWSPEEFGKGGSIVYQKFTKTPYCASPKSVLKGCW 351          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.987e-67
Identity = 125/190 (65.79%), Postives = 147/190 (77.37%), Query Frame = -1
Query:  274 TKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 843
            T++WHVYSASA      +PVYTLEMCM GLDR++ASVFYKT ESSAA MT  SGIRKILPK EICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VGYD +  +L PL+ERVLACF+PAEFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct:  160 TQKWHVYSASAGTVQCNDPVYTLEMCMAGLDREKASVFYKTEESSAAHMTVRSGIRKILPKFEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVGYDPKTTELGPLVERVLACFEPAEFSIALHADVATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPYCESPKSVLKGCW 349          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.692e-67
Identity = 124/189 (65.61%), Postives = 146/189 (77.25%), Query Frame = -1
Query:  274 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 840
            ++WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVLACF+P EFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct:  163 QKWHVYSASAGPIQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHADVATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPFCGSPKSVLKGCW 351          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.692e-67
Identity = 124/189 (65.61%), Postives = 146/189 (77.25%), Query Frame = -1
Query:  274 KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCCW 840
            ++WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVLACF+P EFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F+R     SP+S+LK CW
Sbjct:  163 QKWHVYSASAGPIQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHADVATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPFCGSPKSVLKGCW 351          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.812e-64
Identity = 126/197 (63.96%), Postives = 157/197 (79.70%), Query Frame = -1
Query:  271 KRWHVYSASAEAGSHVN---PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALH--SDIVGDEHGDTFMLDLKGYSCGEKIYEEL-GNNGSLIYYSFSRADCST-SPRSILKCCWS 840
            ++WHVYSASAE+ + V    PVYTLEM MTGL ++ ASVF+K+  SSAA+MTEDSGIRKILP+S+ICDF+FDPCGYSMN+IEGDA+STIHVTPEDGFSYASFEAVGYDF+ + LT L+ERVLACF+P+EFSVALH   ++V D + +   +++KGY+  E  +E L G  GS++YY F+R   S  SPRS L  CWS
Sbjct:  158 QKWHVYSASAESANLVTQTAPVYTLEMSMTGLSKRNASVFFKSESSSAAVMTEDSGIRKILPESQICDFDFDPCGYSMNAIEGDAISTIHVTPEDGFSYASFEAVGYDFKSMGLTVLIERVLACFEPSEFSVALHGNENVVKDLNLENNDVNVKGYNVEETKFEVLGGEGGSMVYYGFARGGSSCGSPRSTLHRCWS 354          
BLAST of CV885035 vs. ExPASy Swiss-Prot
Match: DCAM1_ARATH (S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 2.004e-63
Identity = 118/194 (60.82%), Postives = 149/194 (76.80%), Query Frame = -1
Query:  271 TKRWHVYSASAEAGSHVNP-VYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSR-ADCSTSPRSILKCCWS 843
            TK+WHVY+ASA+  S+ N  VYTLEMCMTGLDR++A+VFYK        MT++SGIRKILPKSEICDFEF+PCGYSMNSIEGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ RVL+CF+P +FSVA+HS +  + +     +DL+ Y C E+ +E LG  +G+++Y +F +      SPRS LKC WS
Sbjct:  158 TKKWHVYAASAQDSSNCNNNVYTLEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGDAISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYKPEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTLKCEWS 351          
The following BLAST results are available for this feature:
BLAST of CV885035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DCAM_IPONI4.028e-7265.26S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_IPOBA1.531e-7165.26S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_SOLTU4.609e-6866.32S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_CATRO1.027e-6766.67S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_DATST1.341e-6765.26S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_SOLCI2.987e-6765.79S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_TOBAC8.692e-6765.61S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_NICSY8.692e-6765.61S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_HELAN1.812e-6463.96S-adenosylmethionine decarboxylase proenzyme OS=He... [more]
DCAM1_ARATH2.004e-6360.82S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885035 ID=CV885035; Name=CV885035; organism=Citrus sinensis; type=EST; length=846bp
TAATAATATGACTCTTATTATAAAAGAAGATACTGGTTTAACATCTACAT
CTCCGGAAATCCAACATAACAGAAATCCAAAAACATAAGACCTTGTTCAC
AATAACAGGAAAAATGCAGCAAAACGGAAAGGTAAAGGCTGCTCAAGCCC
TACCATTACATAACCCCACCACATTTTATTATATAAGCGAAGGATTAAAA
TGAAAAAAACAAACACGATATTATATCCGGGACACTATTTCCCTTCAACT
TCCTCGTCCTTCTCGTCCTCGCTCCAACAGCATTTCAAGATTGACCTAGG
AGATGTGGAGCAATCAGCCCTCGAAAAGCTGTAGTAGATCAGCGAACCAT
TATTACCGAGCTCTTCATATATCTTTTCTCCACAGGAATATCCCTTCAAG
TCCAGCATGAAGGTGTCTCCATGTTCATCGCCAACAATGTCAGAATGCAG
AGCAACAGAAAACTCAGCGGGTTTGAAGCAAGCAAGCACCCTCTCAAGCA
AGGGAGTCAACTTCACAACCTCAAAATCATAACCCACAGCCTCAAAACTT
GCATAACTGAAACCATCTTCAGGTGTGACGTGGATAGTAGATACTGCATC
CCCTTCAATACTATTCATGGAGTAACCACAAGGGTCAAACTCAAAATCAC
AAATCTCAGATTTTGGAAGAATCTTTCTGATGCCAGAGTCCTCGGTCATC
ATAGCGGCTGAGCTTTCATTAGTTTTGTAGAAGACAGATGCCCTCTTTCT
GTCCAAACCAGTCATGCACATCTCTAGAGTGTAAACTGGGTTTACATGGC
TTCCTGCTTCAGCAGAGGCAGAGTAAACATGCCATCTCTTTGTGTT
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