CV885034 | Citrus Genome Database

Overview


Name	CV885034
Unique Name	CV885034
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	835

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library UCRCS04-UCR	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig12395	contig	Csv1_Contig12395:25..858.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CV885034 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.706e-45
Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = 1

Query:  496 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFCVP 726
            MALP SAIGFEGYEKRLE+SFFE   FADP G+GLR+L+K Q+DEIL+PAECTIV SLSN++LDSYVLSESSLF  P
Sbjct:    1 MALPASAIGFEGYEKRLEISFFESSFFADPDGKGLRALNKSQIDEILEPAECTIVDSLSNQYLDSYVLSESSLFVYP 77

HSP 2 Score: 76.6406 bits (187), Expect = 4.706e-45
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 2

Query:  716 FVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRY 835
            FVYPYK+IIKTCGTTKLLLSIPAILKLAESLSLSVR+V+Y
Sbjct:   74 FVYPYKIIIKTCGTTKLLLSIPAILKLAESLSLSVRNVKY 113

[Close]

BLAST of CV885034 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.498e-43
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 1

Query:  496 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLF 717
            MALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSYVLSESSLF
Sbjct:    3 MALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSYVLSESSLF 76

HSP 2 Score: 67.0106 bits (162), Expect = 2.498e-43
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 2

Query:  716 FVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRY 835
            FVY YK+IIKTCGTTKLLL+IP ILKLAE+LSL V+ VRY
Sbjct:   76 FVYSYKIIIKTCGTTKLLLAIPPILKLAETLSLKVQDVRY 115

[Close]

BLAST of CV885034 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.241e-43
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 1

Query:  496 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFCVP 726
            MAL  SAIGFEGYEKRLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSYVLSESSLF  P
Sbjct:    1 MALSTSAIGFEGYEKRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVLSESSLFVYP 77

HSP 2 Score: 68.9366 bits (167), Expect = 4.241e-43
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 2

Query:  716 FVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRY 835
            FVYPYK+IIKTCGTTKLLLSIP IL+LA+ LSL V+SV+Y
Sbjct:   74 FVYPYKIIIKTCGTTKLLLSIPPILELADGLSLKVKSVKY 113

[Close]

BLAST of CV885034 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.385e-43
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1

Query:  499 ALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLF 717
            ALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSYVLSESSLF
Sbjct:    4 ALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSYVLSESSLF 76

HSP 2 Score: 67.0106 bits (162), Expect = 9.385e-43
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 2

Query:  716 FVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRY 835
            FVY YK+IIKTCGTTKLLL+IP ILKLAE+LSL V+ VRY
Sbjct:   76 FVYSYKIIIKTCGTTKLLLAIPPILKLAETLSLKVQDVRY 115

[Close]

BLAST of CV885034 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.593e-42
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 1

Query:  496 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFCVP 726
            MAL  SAIGFEGYE RLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSYVLSESSLF  P
Sbjct:    1 MALSTSAIGFEGYENRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVLSESSLFVYP 77

HSP 2 Score: 68.9366 bits (167), Expect = 1.593e-42
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 2

Query:  716 FVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRY 835
            FVYPYK+IIKTCGTTKLLLSIP IL+LA+ LSL V+SV+Y
Sbjct:   74 FVYPYKIIIKTCGTTKLLLSIPPILELADGLSLKVKSVKY 113

[Close]

BLAST of CV885034 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.324e-41
Identity = 60/75 (80.00%), Postives = 69/75 (92.00%), Query Frame = 1

Query:  493 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLF 717
            +M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSLSK QLDEIL PAECTIV +LSN+++DSYVLSESSLF
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLF 76

HSP 2 Score: 65.855 bits (159), Expect = 1.324e-41
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 2

Query:  716 FVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRY 835
            FVY YK+IIKTCGTTKLLL+IP IL+LAE+LSL V+ VRY
Sbjct:   76 FVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRY 115

[Close]

BLAST of CV885034 vs. ExPASy Swiss-Prot
Match: DCAM_DAUCA (S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.324e-41
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 1

Query:  496 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLF 717
            M+  VSAIGFEG+EKRLE+SFFEP  FADP G+GLR LSK+QLDE L PAECTIV+SLSNEH+DSYVLSESSLF
Sbjct:    1 MSSEVSAIGFEGFEKRLEISFFEPSFFADPEGKGLRVLSKNQLDEFLGPAECTIVASLSNEHVDSYVLSESSLF 74

HSP 2 Score: 69.3218 bits (168), Expect = 1.324e-41
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 2

Query:  716 FVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRY 835
            FVY YK+IIKTCGTTKLL SIP ILKLA+SLSL+VRSVRY
Sbjct:   74 FVYAYKIIIKTCGTTKLLKSIPPILKLADSLSLTVRSVRY 113

[Close]

BLAST of CV885034 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.930e-41
Identity = 59/75 (78.67%), Postives = 69/75 (92.00%), Query Frame = 1

Query:  493 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLF 717
            +M LPVSAIGFEG+EKRLE+SF EPG+F+DP G+GLRSLSK QLDEIL PAECTIV +LSN+++DSYVLSESSLF
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFSDPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLF 76

HSP 2 Score: 65.855 bits (159), Expect = 2.930e-41
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 2

Query:  716 FVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRY 835
            FVY YK+IIKTCGTTKLLL+IP IL+LAE+LSL V+ VRY
Sbjct:   76 FVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRY 115

[Close]

BLAST of CV885034 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.818e-41
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 1

Query:  496 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLF 717
            M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSL+K QLDEIL PAECTIV +LSN+++DSYVLSESSLF
Sbjct:    1 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLTKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLF 74

HSP 2 Score: 65.855 bits (159), Expect = 3.818e-41
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 2

Query:  716 FVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRY 835
            FVY YK+IIKTCGTTKLLL+IP IL+LAE+LSL V+ VRY
Sbjct:   74 FVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRY 113

[Close]

BLAST of CV885034 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.483e-41
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 1

Query:  502 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLF 717
            + VSAIGFEG+EKRLE+SF +PG+F+DP GRGLRSL+K QLDEIL PAECTIVSSL+NE +DSYVLSESSLF
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANEDVDSYVLSESSLF 72

HSP 2 Score: 70.0922 bits (170), Expect = 6.483e-41
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 2

Query:  716 FVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRY 835
            FVY YK+IIKTCGTTKLLLSIP ILKLA+S+SL+VRSVRY
Sbjct:   72 FVYAYKLIIKTCGTTKLLLSIPPILKLADSISLNVRSVRY 111

The following BLAST results are available for this feature:

BLAST of CV885034 vs. ExPASy Swiss-Prot

BLAST of CV885034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26


Match Name	E-value	Identity	Description
DCAM_CATRO	4.706e-45	77.92	S-adenosylmethionine decarboxylase proenzyme OS=Ca...	[more]
DCAM_NICSY	2.498e-43	85.14	S-adenosylmethionine decarboxylase proenzyme OS=Ni...	[more]
DCAM_IPONI	4.241e-43	79.22	S-adenosylmethionine decarboxylase proenzyme OS=Ip...	[more]
DCAM_TOBAC	9.385e-43	84.93	S-adenosylmethionine decarboxylase proenzyme OS=Ni...	[more]
DCAM_IPOBA	1.593e-42	77.92	S-adenosylmethionine decarboxylase proenzyme OS=Ip...	[more]
DCAM_SOLTU	1.324e-41	80.00	S-adenosylmethionine decarboxylase proenzyme OS=So...	[more]
DCAM_DAUCA	1.324e-41	79.73	S-adenosylmethionine decarboxylase proenzyme OS=Da...	[more]
DCAM_DATST	2.930e-41	78.67	S-adenosylmethionine decarboxylase proenzyme OS=Da...	[more]
DCAM_SOLCI	3.818e-41	79.73	S-adenosylmethionine decarboxylase proenzyme OS=So...	[more]
DCAM_PEA	6.483e-41	79.17	S-adenosylmethionine decarboxylase proenzyme OS=Pi...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS04_2_012B06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_B06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV885034 ID=CV885034; Name=CV885034; organism=Citrus sinensis; type=EST; length=835bp
GGAGATCGAAATTCGTTTTGTGAAACAGAGTGAAAAATCAACCCTTCTTT
AATCCTCAAGGAATTTTATTATTTTCTTGGTCTCTGAATCGAGGGTTTTG
CTTCTTGGTTTAGTGGGTTTGTTTTCGTTATATTATCTGAGCAAGGCTGA
ATGATCTAATGGAGTCAAAAGGTGGTAAGAAGAAGTCTAGCAGTAGTTCC
TTATTCTACGAAGCTCCTCTTGGTTACAGCATTGAAGACGTTCGACCTCA
CGGTGGCATAAAGAAGTTCAGATCAGCTGCATACTCAAACTGCGTCCGCA
AACCATCCTGAGATCGTCCAATTTGTCCCATACCCCCCCAAAAAAAAGCT
CACTACTACTGCAATTTTAATTTTTTTTAGTTTTAGCCGTCTTAATACTG
CAATTTACTTGGCCTATTTCTTTTTCGACTTCCCTCGTTCTCTCGTTCTG
CCCTCTTTGCTCTTTGCAATTGTCATTTGTTTTCTGTAAGGCAAGATGGC
CTTGCCAGTCTCTGCAATTGGATTTGAAGGTTATGAAAAGAGGCTTGAAG
TTTCCTTTTTTGAGCCTGGTGTCTTTGCTGATCCTGGAGGTAGGGGCCTC
CGCTCTCTGTCAAAACATCAATTGGATGAAATACTGAAACCTGCGGAATG
CACAATTGTTTCTTCGTTGTCAAATGAACATCTTGATTCATATGTCCTCT
CAGAATCAAGCCTCTTTTGTGTACCCTTACAAAGTTATTATCAAAACTTG
TGGGACTACCAAGCTGCTTCTTTCAATCCCTGCCATCCTCAAGTTAGCTG
AGTCCCTCTCGTTGTCTGTTCGATCTGTGAGATAC