CV885026

Overview
NameCV885026
Unique NameCV885026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885026_ssr643 microsatellite CV885026_ssr643:643..654. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4437 contig Csv1_Contig4437:104..917. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_THET2 (Chaperone protein dnaJ OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.623e-14
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = -2
Query:  232 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYG-FVQEMVSMMNNVK-DEGDSFE-DLQRMFVEMVDGMSFDFNYDPTDAQRAC 621
            YYAILG+ ++AS  +I+ AY +LA+K+HPDR   NPG   EA+ RF++I EAY+VLSD  KR+ YD G  +  E   ED +  F QE+  +  + +   G+  E +++    +++ G   +  Y       AC
Sbjct:    4 YYAILGVSREASQEEIKKAYRRLALKYHPDR---NPG-DKEAEERFKEINEAYAVLSDPKKRAAYDRGHLEAPEYRPEDLFDLFFQEVFGVRGHRRPPRGEDLEAEVEVELQDLLHGAEKEVRYTRLVPCEAC 132          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_NITSB (Chaperone protein dnaJ OS=Nitratiruptor sp. (strain SB155-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.623e-14
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = -2
Query:  271 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSF 621
            YY +L + ++ASF +I+ AY KLA+K+HPDR+  NP    EA+ +F+ I EAY VLSDE KR++YD   Y     E++ F GF Q+             SF+D+   F E V G +F
Sbjct:    6 YYELLEVDRNASFEEIKKAYRKLALKYHPDRNPDNP----EAEEKFKLINEAYQVLSDEEKRALYDQ--YGKAGLENQGFSGFNQK-------------SFDDIMDFF-ESVFGETF 102          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_METAC (Chaperone protein dnaJ OS=Methanosarcina acetivorans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.623e-14
Identity = 62/164 (37.80%), Postives = 81/164 (49.39%), Query Frame = -2
Query:  184 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD----AGLYDPLEEED----EDFYGFVQEMVSMMNNVKDEG--------DSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTS--RC 621
            YY ILG+ KDAS  DI+  Y KLA+++HPDR+ K+PG    A+ +F++I EAY+VLSD  KR+ YD    AG+ +    ED     DF GF           +  G        D   DL   F E   G+  D +   T+    C     G  AK GTS  RC
Sbjct:    7 YYEILGLPKDASVEDIKKTYRKLALQYHPDRN-KDPG----AEDKFKEISEAYAVLSDTEKRAQYDRFGHAGIDNQYSAEDIFRGADFGGFGDIFEMFFGGGRRGGPMGPRRGSDLQYDLYITFEEAAFGVRKDIDIPRTERCSTC----SGTGAKPGTSPKRC 161          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ1_THET8 (Chaperone protein dnaJ 1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.623e-14
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = -2
Query:  232 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYG-FVQEMVSMMNNVK-DEGDSFE-DLQRMFVEMVDGMSFDFNYDPTDAQRAC 621
            YYAILG+ ++AS  +I+ AY +LA+K+HPDR   NPG   EA+ RF++I EAY+VLSD  KR+ YD G  +  E   ED +  F QE+  +  + +   G+  E +++    +++ G   +  Y       AC
Sbjct:    4 YYAILGVSREASQEEIKKAYRRLALKYHPDR---NPG-DKEAEERFKEINEAYAVLSDPKKRAAYDRGHLEAPEYRPEDLFDLFFQEVFGVRGHRRPPRGEDLEAEVEVELQDLLHGAEKEVRYTRLVPCEAC 132          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_METMA (Chaperone protein dnaJ OS=Methanosarcina mazei GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.723e-14
Identity = 61/164 (37.20%), Postives = 80/164 (48.78%), Query Frame = -2
Query:  184 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD----AGLYDPLEEED----EDFYGFVQEMVSMMNNVKDEG--------DSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTS--RC 621
            YY ILG+ KD+S  DI+  Y KLA+++HPDR+ K PG    A+ +F++I EAY+VLSD  KR+ YD    AG+ +    ED     DF GF           +  G        D   DL   F E   G+  D +   T+    C     G  AK GTS  RC
Sbjct:    7 YYEILGLSKDSSVEDIKKTYRKLALQYHPDRN-KEPG----AEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGADFGGFGDIFEMFFGGGRRGGPMGPRRGSDLQYDLYVTFEEAAFGVRKDIDIPRTERCSTC----SGTGAKPGTSPKRC 161          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_THEP1 (Chaperone protein dnaJ OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.168e-14
Identity = 50/142 (35.21%), Postives = 73/142 (51.41%), Query Frame = -2
Query:  196 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 621
            YY ILG+ +DA+  +I+ AY +L  +WHPDR  +N     EA+ RF++IQEAY VLSD  KR+MYD              +G+V E  +      + G  FED+ + F  + +   FD  +     Q       K + A+RG
Sbjct:    8 YYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPEN---RKEAEQRFKEIQEAYEVLSDPQKRAMYDR-------------FGYVGEQPTYQET--ESGGFFEDIFKEFENIFNRDIFDVFFGERPGQE-----EKREYARRG 126          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNJB6_XENTR (DnaJ homolog subfamily B member 6 OS=Xenopus tropicalis GN=dnajb6 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY +LG++++AS  DI+ AY KLA+KWHPD   KNP    EA+ RF+++ EAY VLSD  KR +YD
Sbjct:    4 YYDVLGVQRNASPEDIKKAYRKLALKWHPD---KNPDNKDEAERRFKEVAEAYEVLSDSKKRDIYD 66          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNJB6_CHICK (DnaJ homolog subfamily B member 6 OS=Gallus gallus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY +LG++K AS  DI+ AY KLA+KWHPD   KNP    EA+ +F+Q+ EAY VLSD  KR +YD
Sbjct:    4 YYEVLGVQKHASAEDIKKAYRKLALKWHPD---KNPENKEEAEQQFKQVAEAYEVLSDAKKRDIYD 66          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNJ6A_XENLA (DnaJ homolog subfamily B member 6-A OS=Xenopus laevis GN=dnajb6-A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  424 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 621
            YY +LG++++AS  DI+ AY +LA+KWHPD   KNP    EA+ RF+++ EAY VLSD  KR +YD
Sbjct:    4 YYEVLGVQRNASADDIKKAYRRLALKWHPD---KNPDNKDEAERRFKEVAEAYEVLSDSKKRDIYD 66          
BLAST of CV885026 vs. ExPASy Swiss-Prot
Match: DNAJ_THENN (Chaperone protein dnaJ OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 47/128 (36.72%), Postives = 68/128 (53.12%), Query Frame = -2
Query:  238 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSMMNNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQR 621
            YY ILG+ ++A+  +IR AY +L  +WHPDR  +N     EA+ RF++IQEAY VLSD  KR+MYD              +G+V E   +    +  G  FED+ R F  + +   FD  +     +R
Sbjct:    8 YYEILGVPRNATQEEIRKAYKRLVKEWHPDRHPEN---RKEAEQRFKEIQEAYEVLSDPQKRAMYDR-------------FGYVGEQ-PVYQEAETGGSFFEDVFREFENIFNRDIFDVFFGEESGRR 118          
The following BLAST results are available for this feature:
BLAST of CV885026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
DNAJ_THET21.623e-1437.59Chaperone protein dnaJ OS=Thermus thermophilus (st... [more]
DNAJ_NITSB1.623e-1441.88Chaperone protein dnaJ OS=Nitratiruptor sp. (strai... [more]
DNAJ_METAC1.623e-1437.80Chaperone protein dnaJ OS=Methanosarcina acetivora... [more]
DNAJ1_THET81.623e-1437.59Chaperone protein dnaJ 1 OS=Thermus thermophilus (... [more]
DNAJ_METMA4.723e-1437.20Chaperone protein dnaJ OS=Methanosarcina mazei GN=... [more]
DNAJ_THEP16.168e-1435.21Chaperone protein dnaJ OS=Thermotoga petrophila (s... [more]
DNJB6_XENTR8.056e-1454.55DnaJ homolog subfamily B member 6 OS=Xenopus tropi... [more]
DNJB6_CHICK8.056e-1456.06DnaJ homolog subfamily B member 6 OS=Gallus gallus... [more]
DNJ6A_XENLA8.056e-1453.03DnaJ homolog subfamily B member 6-A OS=Xenopus lae... [more]
DNAJ_THENN8.056e-1436.72Chaperone protein dnaJ OS=Thermotoga neapolitana (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012B02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885026 ID=CV885026; Name=CV885026; organism=Citrus sinensis; type=EST; length=814bp
TTTATAAAGAAAATATCACGGTCCAAATGCTAACACCCCCGAGATTTAAA
AAAAAAAAAAAATTCTTAAACTACCCACCCCCAACATAAGGGATTAATTT
GAAGATTAGAACAAAATGGGGGGAATTGATCAACAACATCATCATTAGCT
TGAATGATCAGAGATGATCCAGAGCGATTGTCAGCAACGAGAAGTACCGC
GCTTGGCCGCTTTACCCTTTGATGTGTTGACACATGCTCTTTGCGCGTCC
GTAGGATCATAATTAAAGTCGAAGCTCATCCCATCCACCATTTCCACGAA
CATCCTTTGGAGGTCCTCAAAACTGTCCCCCTCGTCTTTAACATTATTCA
TCATGGAGACCATCTCTTGCACAAAACCATAGAAGTCCTCATCTTCTTCC
TCAAGGGGATCATAGAGTCCAGCATCGTACATTGACCTCTTGTTCTCATC
AGAGAGGACGGAGTAAGCTTCTTGAATTTGCTGAAACCGGCATTTGGCTT
CCCCGGCCACTCCCGGGTTCTTCGCACTCCTATCCGGATGCCATTTCATG
GCGAGCTTGTGATAAGCGGAGCGAATGTCAGAGAAGGAGGCGTCCTTGCG
AATCCCAAGAATCGCGTAGTAGCTCAAAGATCCGCCGTTGGATCCTCCTC
CTCCATCCATCACAGCAACCAAAAAAGAAAACAGCAATAAGGATGTAATA
TGCTTGTCAAGATAAAATCATATGAAGAAACGGAAACAAACTGTTATGAA
GAGAGCATTTAGAGGATTGATAAAGCAGAGAAAAATAAAGGAATATTTTG
GTTTCTCCTTTTTT
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