CX043267

Overview
NameCX043267
Unique NameCX043267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043267_ssr584 microsatellite CX043267_ssr584:584..595. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8720 contig Csv1_Contig8720:215..1048. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043267 vs. ExPASy Swiss-Prot
Match: CWC15_EMENI (Pre-mRNA-splicing factor cwc15 OS=Emericella nidulans GN=cwc15 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.037e-16
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = -1
Query:  277 GNPLLNNPTSFNVKRRWDDDVVFKNQARG-ETKTPKRFINDTIRNDFHRKFLQKYMK 444
            GNPLLN P+ FN+KRRWDDDVVFKNQARG E K  K F+ND +R+DFH+KF+ KY++
Sbjct:  177 GNPLLN-PSDFNIKRRWDDDVVFKNQARGTEDKRGKEFVNDLLRSDFHKKFMSKYVR 232          
BLAST of CX043267 vs. ExPASy Swiss-Prot
Match: CW15A_XENLA (Protein CWC15 homolog A OS=Xenopus laevis GN=cwc15-A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.830e-15
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = -1
Query:  277 LLVGNPLLN-------NPTSFNVKRRWDDDVVFKNQARG--ETKTPKRFINDTIRNDFHRKFLQKYMK 453
            +L GNPLLN       +  SF VKRRWDDDVVFKN A+G  E K  KRF+NDT+R++FH+KF++KY+K
Sbjct:  161 ILSGNPLLNLTGPAAQSQASFKVKRRWDDDVVFKNCAKGVDEMKKQKRFVNDTLRSEFHKKFMEKYIK 228          
BLAST of CX043267 vs. ExPASy Swiss-Prot
Match: CWC15_XENTR (Protein CWC15 homolog OS=Xenopus tropicalis GN=cwc15 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.299e-14
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = -1
Query:  277 LLVGNPLLN------NPTSFNVKRRWDDDVVFKNQARG--ETKTPKRFINDTIRNDFHRKFLQKYMK 453
            +L GNPLLN      +  +F VKRRWDDDVVFKN A+G  E K  KRF+NDT+R++FH+KF++KY+K
Sbjct:  161 ILSGNPLLNLTGPAQSVAAFKVKRRWDDDVVFKNCAKGVDEMKKDKRFVNDTLRSEFHKKFMEKYIK 227          
BLAST of CX043267 vs. ExPASy Swiss-Prot
Match: CWC15_RAT (Protein CWC15 homolog OS=Rattus norvegicus GN=Cwc15 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.935e-14
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = -1
Query:  277 LLVGNPLLN------NPTSFNVKRRWDDDVVFKNQARG--ETKTPKRFINDTIRNDFHRKFLQKYMK 453
            +L GNPLLN         +F VKRRWDDDVVFKN A+G  + K  KRF+NDT+R++FH+KF++KY+K
Sbjct:  163 ILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGIDDQKKDKRFVNDTLRSEFHKKFMEKYIK 229          
BLAST of CX043267 vs. ExPASy Swiss-Prot
Match: CWC15_PONAB (Protein CWC15 homolog OS=Pongo abelii GN=CWC15 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.935e-14
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = -1
Query:  277 LLVGNPLLN------NPTSFNVKRRWDDDVVFKNQARG--ETKTPKRFINDTIRNDFHRKFLQKYMK 453
            +L GNPLLN         +F VKRRWDDDVVFKN A+G  + K  KRF+NDT+R++FH+KF++KY+K
Sbjct:  163 ILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 229          
BLAST of CX043267 vs. ExPASy Swiss-Prot
Match: CWC15_MOUSE (Protein CWC15 homolog OS=Mus musculus GN=Cwc15 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.935e-14
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = -1
Query:  277 LLVGNPLLN------NPTSFNVKRRWDDDVVFKNQARG--ETKTPKRFINDTIRNDFHRKFLQKYMK 453
            +L GNPLLN         +F VKRRWDDDVVFKN A+G  + K  KRF+NDT+R++FH+KF++KY+K
Sbjct:  163 ILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGIDDQKKDKRFVNDTLRSEFHKKFMEKYIK 229          
BLAST of CX043267 vs. ExPASy Swiss-Prot
Match: CWC15_HUMAN (Protein CWC15 homolog OS=Homo sapiens GN=CWC15 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.935e-14
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = -1
Query:  277 LLVGNPLLN------NPTSFNVKRRWDDDVVFKNQARG--ETKTPKRFINDTIRNDFHRKFLQKYMK 453
            +L GNPLLN         +F VKRRWDDDVVFKN A+G  + K  KRF+NDT+R++FH+KF++KY+K
Sbjct:  163 ILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 229          
BLAST of CX043267 vs. ExPASy Swiss-Prot
Match: CWC15_BOVIN (Protein CWC15 homolog OS=Bos taurus GN=CWC15 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.935e-14
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = -1
Query:  277 LLVGNPLLN------NPTSFNVKRRWDDDVVFKNQARG--ETKTPKRFINDTIRNDFHRKFLQKYMK 453
            +L GNPLLN         +F VKRRWDDDVVFKN A+G  + K  KRF+NDT+R++FH+KF++KY+K
Sbjct:  165 ILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 231          
BLAST of CX043267 vs. ExPASy Swiss-Prot
Match: CW15B_XENLA (Protein CWC15 homolog B OS=Xenopus laevis GN=cwc15-B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.445e-14
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = -1
Query:  277 LLVGNPLLN-------NPTSFNVKRRWDDDVVFKNQARG----ETKTPKRFINDTIRNDFHRKFLQKYMK 453
            +L GNPLLN       +  SF VKRRWDDDVVFKN A+G    + +  KRF+NDT+R++FH+KF++KY+K
Sbjct:  161 ILSGNPLLNLTGPAAQSQASFKVKRRWDDDVVFKNCAKGVDEMKKRQDKRFVNDTLRSEFHKKFMEKYVK 230          
BLAST of CX043267 vs. ExPASy Swiss-Prot
Match: CWC15_DANRE (Protein CWC15 homolog OS=Danio rerio GN=cwc15 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.875e-13
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = -1
Query:  277 LLVGNPLLN----------------NPTSFNVKRRWDDDVVFKNQARG--ETKTPKRFINDTIRNDFHRKFLQKYMK 453
            +L GNPLLN                   +F+VKRRWDDDVVFKN A+G  E++  KRF+NDT+R++FH+KF++KY+K
Sbjct:  167 ILSGNPLLNLAGQQQQQQQQQQQTQTKNTFSVKRRWDDDVVFKNCAKGVDESRKEKRFVNDTLRSEFHKKFMEKYVK 243          
The following BLAST results are available for this feature:
BLAST of CX043267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CWC15_EMENI4.037e-1668.42Pre-mRNA-splicing factor cwc15 OS=Emericella nidul... [more]
CW15A_XENLA5.830e-1558.82Protein CWC15 homolog A OS=Xenopus laevis GN=cwc15... [more]
CWC15_XENTR1.299e-1458.21Protein CWC15 homolog OS=Xenopus tropicalis GN=cwc... [more]
CWC15_RAT4.935e-1456.72Protein CWC15 homolog OS=Rattus norvegicus GN=Cwc1... [more]
CWC15_PONAB4.935e-1456.72Protein CWC15 homolog OS=Pongo abelii GN=CWC15 PE=... [more]
CWC15_MOUSE4.935e-1456.72Protein CWC15 homolog OS=Mus musculus GN=Cwc15 PE=... [more]
CWC15_HUMAN4.935e-1456.72Protein CWC15 homolog OS=Homo sapiens GN=CWC15 PE=... [more]
CWC15_BOVIN4.935e-1456.72Protein CWC15 homolog OS=Bos taurus GN=CWC15 PE=2 ... [more]
CW15B_XENLA6.445e-1454.29Protein CWC15 homolog B OS=Xenopus laevis GN=cwc15... [more]
CWC15_DANRE1.875e-1349.35Protein CWC15 homolog OS=Danio rerio GN=cwc15 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A02-B4-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043267 ID=CX043267; Name=CX043267; organism=Citrus sinensis; type=EST; length=834bp
GCCCCCCAAAAATCTTTACAATAGCCCAAATGTTAACTAGCACTTAATCA
CCATAAGTGTTAACAGTGTTTCAGTAATCAGTCAACTCATTGAAAACAAT
TACAGCTTCATATTCTCATATATTGCTGCAGATGTTTGGCTCTTACTACA
TGGTAGCCCTCAAATTCAAACCCAGAGTCAATGACTAATACAAACAAGGA
TTTAAACCAAGGTCTTTTTCTTTGATTGAAGCAGTAAAACTTGGCCCTTC
ACCTCAAATTTACTTCAGCGAAGCTACTTCATGTATTTCTGTAAGAATTT
CCTGTGGAAGTCATTCCTGATAGTGTCATTGATGAAGCGCTTGGGAGTCT
TGGTTTCACCACGGGCTTGGTTCTTGAAAACCACATCGTCATCCCACCTT
CTTTTCACATTAAAGGATGTTGGATTATTCAGCAATGGATTTCCTACAAG
AAGCTCTGATTCCTTGGCTTTAGCCTCTTCTTCCCACTGTTCTTTTTCCT
TCCGGAGCTTCTCCTCCGCTCTTTCCTTCTTTATTAGTTCAAGCTCAGCC
AAAAGTGCTTCAGTGTCATCCTCATCATCGTCGTCATCATCATCACTCTC
ATCATCACTTTTGACTTCGACATCAGAATCATCAGCATCTATGCTACGTG
GAGCAGCACGGTCCTCCATATCCCTCTTTGTCCCTTCCAACAAAAGATGG
CTACTCTTCCGACGATCTCTGTCATCATTGTAGGACTTATCCTTAGATGA
GAAATGTCTCCGTTCACGCTCTTCTAGCTCATGCCGGAGGTTCCTTTTCT
GTAATTCATCTTTGGTATCTTGTCCTTCTTTTCT
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