CV884953

Overview
NameCV884953
Unique NameCV884953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6837 contig Csv1_Contig6837:462..1071. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884953 vs. ExPASy Swiss-Prot
Match: VATE_CITUN (V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 6.790e-69
Identity = 136/147 (92.52%), Postives = 136/147 (92.52%), Query Frame = -3
Query:  168 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 608
            AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL           PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct:   84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230          
BLAST of CV884953 vs. ExPASy Swiss-Prot
Match: VATE_CITLI (V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 4.401e-68
Identity = 135/147 (91.84%), Postives = 135/147 (91.84%), Query Frame = -3
Query:  168 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 608
            AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL           PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct:   84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230          
BLAST of CV884953 vs. ExPASy Swiss-Prot
Match: VATE_GOSHI (V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.922e-47
Identity = 104/157 (66.24%), Postives = 116/157 (73.89%), Query Frame = -3
Query:  168 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD----------HHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 608
            AQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQSL+RLKEP VLLRCRK+D HLVESVL+SAKEEYA K+ VHPPEIIVD          HH +              CSGGVV+ASRDGKIV ENTLDARLDV F KKLPEIRK L  QVAA
Sbjct:   84 AQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQSLVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVDDVHLPPGPSHHHGFFHHHAEAHGPF---CSGGVVIASRDGKIVFENTLDARLDVAFNKKLPEIRKWLFGQVAA 237          
BLAST of CV884953 vs. ExPASy Swiss-Prot
Match: VATE_SPIOL (V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.125e-46
Identity = 99/147 (67.35%), Postives = 115/147 (78.23%), Query Frame = -3
Query:  168 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 608
            AQDDLV++M E A+KE+L VS DH+ YK+LLK L+VQSLLRL+EP VLLRCR+DD HLVE VL SAKEEYA+K +VH PEIIVD  I+L             CSGGVV+ASRDGKIV ENTLDARL+V FRKKLP+IRKQL +  AA
Sbjct:   84 AQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQSLLRLREPGVLLRCREDDVHLVEHVLNSAKEEYAEKAEVHTPEIIVD-SIHLPAGPSHHKEHGLHCSGGVVLASRDGKIVFENTLDARLEVAFRKKLPQIRKQLFAVAAA 229          
BLAST of CV884953 vs. ExPASy Swiss-Prot
Match: VATE1_ARATH (V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.166e-44
Identity = 94/147 (63.95%), Postives = 111/147 (75.51%), Query Frame = -3
Query:  168 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 608
            AQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+L             CSGGVV+ASRDGKIVCENTLDARLDV FR KLP IRK L  QV A
Sbjct:   84 AQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSNDPHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQVTA 230          
BLAST of CV884953 vs. ExPASy Swiss-Prot
Match: VATE_MESCR (V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.092e-42
Identity = 95/141 (67.38%), Postives = 108/141 (76.60%), Query Frame = -3
Query:  186 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 608
            AQDDLV+ M EAASKE+L VS DH+ Y+ LLK LIVQSLLRLKEPAVLLRCR++D H V  VL SA+EEY +K  V  PE+IVD  I+L            SCSGGVV+ASRDGKIV ENTLDARL+V FRKKLP+IRKQL
Sbjct:   84 AQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQSLLRLKEPAVLLRCREEDKHHVHRVLHSAREEYGEKACVSHPEVIVD-DIHLPPAPTSYDSHELSCSGGVVMASRDGKIVFENTLDARLEVAFRKKLPQIRKQL 223          
BLAST of CV884953 vs. ExPASy Swiss-Prot
Match: VATE3_ARATH (V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.426e-42
Identity = 92/153 (60.13%), Postives = 111/153 (72.55%), Query Frame = -3
Query:  168 AQDDLVSNMMEAASKEVLNVSRD------HNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 608
            AQDD+V+ M E A+K++L VS+       H+ YK LLK LIVQ LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+L            SC+GGVV+ASRDGKIVCENTLDARL+V FR KLPEIRK L  +V A
Sbjct:   84 AQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPPAPSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGKVGA 236          
BLAST of CV884953 vs. ExPASy Swiss-Prot
Match: VATE2_ARATH (V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.973e-40
Identity = 84/144 (58.33%), Postives = 110/144 (76.39%), Query Frame = -3
Query:  183 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPS--CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV 608
            AQDD+V+ M ++A+K++L VS D N+YKKLLK LI++SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++L               CSGGVV+AS+DGKIVCENTLDARLDV FR+KLP+IR +LV
Sbjct:   84 AQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKLPDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLV 227          
BLAST of CV884953 vs. ExPASy Swiss-Prot
Match: VATE2_BOVIN (V-type proton ATPase subunit E 2 OS=Bos taurus GN=ATP6V1E2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.073e-17
Identity = 52/141 (36.88%), Postives = 81/141 (57.45%), Query Frame = -3
Query:  186 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 608
            A++DL+S ++  A   +  +  D   Y+ LL  L++Q LLRL EP V++RCR  DH LVE+ ++ A  +Y   +     E+ VD  + L              +GGV V S D +I+  NTL++RLD++ ++K+PEIRK L
Sbjct:   86 ARNDLISELLNDAKLRLSRIVTDPEFYQGLLDKLVLQGLLRLLEPVVIVRCRPQDHFLVEAAVQRAIPQYT-AVSHRCVEVQVDKEVQL----------ATDTTGGVEVYSSDQRIMVSNTLESRLDLLSQQKMPEIRKAL 215          
BLAST of CV884953 vs. ExPASy Swiss-Prot
Match: VATE_HETSC (V-type proton ATPase subunit E OS=Heterodera schachtii PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.909e-16
Identity = 50/141 (35.46%), Postives = 79/141 (56.03%), Query Frame = -3
Query:  186 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 608
            A+DD + N++E A   +  +S D   Y  +LKGL++Q L +L E  V+LRCRK D  +V  +L    EE  Q+   +  E+ +D+  +L           P  +GGV + ++DGKI   +TL+ARLD++  K  P++R  L
Sbjct:   86 ARDDHLKNVLEEARANLSKISADRERYPAILKGLLLQGLFQLLESKVVLRCRKKDEEMVARILPECLEE-VQRTWGNRSEVKIDNEHFL----------SPESAGGVELLAKDGKIRVSSTLEARLDLIADKITPQVRTAL 215          
The following BLAST results are available for this feature:
BLAST of CV884953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
VATE_CITUN6.790e-6992.52V-type proton ATPase subunit E OS=Citrus unshiu GN... [more]
VATE_CITLI4.401e-6891.84V-type proton ATPase subunit E OS=Citrus limon GN=... [more]
VATE_GOSHI1.922e-4766.24V-type proton ATPase subunit E OS=Gossypium hirsut... [more]
VATE_SPIOL2.125e-4667.35V-type proton ATPase subunit E OS=Spinacia olerace... [more]
VATE1_ARATH1.166e-4463.95V-type proton ATPase subunit E1 OS=Arabidopsis tha... [more]
VATE_MESCR1.092e-4267.38V-type proton ATPase subunit E OS=Mesembryanthemum... [more]
VATE3_ARATH1.426e-4260.13V-type proton ATPase subunit E3 OS=Arabidopsis tha... [more]
VATE2_ARATH2.973e-4058.33V-type proton ATPase subunit E2 OS=Arabidopsis tha... [more]
VATE2_BOVIN2.073e-1736.88V-type proton ATPase subunit E 2 OS=Bos taurus GN=... [more]
VATE_HETSC3.909e-1635.46V-type proton ATPase subunit E OS=Heterodera schac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011E12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884953 ID=CV884953; Name=CV884953; organism=Citrus sinensis; type=EST; length=610bp
ATCCAGAACAGATTCACTGATTTTCACAAATAAAGATATTCTGCAAACAT
TATAATTTAAAATATGCAAACAAACAGGAAATAATAAATTTTATGGTCAA
TAACTAAACTTAAAAACTTCGGACATGAATAATCAGAGGGTGACAAACAA
TTCAAATTAACTCATCATGCAGCAACCTGACTGACGAGCTGCTTCCGGAT
CTCAGGAAGTTTTTTACGGAACACAACATCCAACCGTGCATCAAGGGTAT
TCTCACATACTATCTTCCCATCTCGAGAAGCCACCACGACACCTCCTGAG
CAGGATGGACCATGGGCATTATGATGGCCAGGGCCAGGCGGAAGATAGAT
GTGATGATCCACAATTATCTCTGGTGGGTGAACCTGCAATTTCTGTGCAT
ATTCCTCTTTTGCTGACTCCAAAACAGACTCCACCAAATGATGGTCATCT
TTGCGGCATCTCAGTAACACAGCTGGCTCTTTCAGCCTGAGCAAACTCTG
AACAATAAGACCCTTCAAAAGCTTCTTATATGAATTGTGATCGCGACTCA
CATTCAAAACCTCCTTTGATGCTGCCTCCATCATATTACTGACCAAATCA
TCCTGAGCCT
back to top