CV884952

Overview
NameCV884952
Unique NameCV884952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6837 contig Csv1_Contig6837:446..1068. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884952 vs. ExPASy Swiss-Prot
Match: VATE_CITUN (V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.054e-68
Identity = 134/146 (91.78%), Postives = 134/146 (91.78%), Query Frame = 3
Query:    3 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 440
            QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL            SCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct:   85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230          
BLAST of CV884952 vs. ExPASy Swiss-Prot
Match: VATE_CITLI (V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.331e-67
Identity = 133/146 (91.10%), Postives = 133/146 (91.10%), Query Frame = 3
Query:    3 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 440
            QDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL            SCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct:   85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230          
BLAST of CV884952 vs. ExPASy Swiss-Prot
Match: VATE_GOSHI (V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.815e-47
Identity = 103/156 (66.03%), Postives = 115/156 (73.72%), Query Frame = 3
Query:    3 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD----------HHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 440
            QDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQSL+RLKEP VLLRCRK+D HLVESVL+SAKEEYA K+ VHPPEIIVD          HH +              CSGGVV+ASRDGKIV ENTLDARLDV F KKLPEIRK L  QVAA
Sbjct:   85 QDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQSLVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVDDVHLPPGPSHHHGFFHHHAEAHGPF---CSGGVVIASRDGKIVFENTLDARLDVAFNKKLPEIRKWLFGQVAA 237          
BLAST of CV884952 vs. ExPASy Swiss-Prot
Match: VATE_SPIOL (V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.429e-46
Identity = 98/146 (67.12%), Postives = 114/146 (78.08%), Query Frame = 3
Query:    3 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 440
            QDDLV++M E A+KE+L VS DH+ YK+LLK L+VQSLLRL+EP VLLRCR+DD HLVE VL SAKEEYA+K +VH PEIIVD  I+L             CSGGVV+ASRDGKIV ENTLDARL+V FRKKLP+IRKQL +  AA
Sbjct:   85 QDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQSLLRLREPGVLLRCREDDVHLVEHVLNSAKEEYAEKAEVHTPEIIVD-SIHLPAGPSHHKEHGLHCSGGVVLASRDGKIVFENTLDARLEVAFRKKLPQIRKQLFAVAAA 229          
BLAST of CV884952 vs. ExPASy Swiss-Prot
Match: VATE1_ARATH (V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 3.528e-44
Identity = 93/146 (63.70%), Postives = 110/146 (75.34%), Query Frame = 3
Query:    3 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 440
            QDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+L             CSGGVV+ASRDGKIVCENTLDARLDV FR KLP IRK L  QV A
Sbjct:   85 QDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSNDPHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQVTA 230          
BLAST of CV884952 vs. ExPASy Swiss-Prot
Match: VATE_MESCR (V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.302e-42
Identity = 94/140 (67.14%), Postives = 107/140 (76.43%), Query Frame = 3
Query:    3 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 422
            QDDLV+ M EAASKE+L VS DH+ Y+ LLK LIVQSLLRLKEPAVLLRCR++D H V  VL SA+EEY +K  V  PE+IVD  I+L            SCSGGVV+ASRDGKIV ENTLDARL+V FRKKLP+IRKQL
Sbjct:   85 QDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQSLLRLKEPAVLLRCREEDKHHVHRVLHSAREEYGEKACVSHPEVIVD-DIHLPPAPTSYDSHELSCSGGVVMASRDGKIVFENTLDARLEVAFRKKLPQIRKQL 223          
BLAST of CV884952 vs. ExPASy Swiss-Prot
Match: VATE3_ARATH (V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.312e-42
Identity = 91/152 (59.87%), Postives = 110/152 (72.37%), Query Frame = 3
Query:    3 QDDLVSNMMEAASKEVLNVSRD------HNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 440
            QDD+V+ M E A+K++L VS+       H+ YK LLK LIVQ LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+L            SC+GGVV+ASRDGKIVCENTLDARL+V FR KLPEIRK L  +V A
Sbjct:   85 QDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPPAPSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGKVGA 236          
BLAST of CV884952 vs. ExPASy Swiss-Prot
Match: VATE2_ARATH (V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.991e-40
Identity = 83/143 (58.04%), Postives = 109/143 (76.22%), Query Frame = 3
Query:    3 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXS--CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV 425
            QDD+V+ M ++A+K++L VS D N+YKKLLK LI++SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++L               CSGGVV+AS+DGKIVCENTLDARLDV FR+KLP+IR +LV
Sbjct:   85 QDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKLPDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLV 227          
BLAST of CV884952 vs. ExPASy Swiss-Prot
Match: VATE2_BOVIN (V-type proton ATPase subunit E 2 OS=Bos taurus GN=ATP6V1E2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.270e-17
Identity = 51/140 (36.43%), Postives = 80/140 (57.14%), Query Frame = 3
Query:    3 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 422
            ++DL+S ++  A   +  +  D   Y+ LL  L++Q LLRL EP V++RCR  DH LVE+ ++ A  +Y   +     E+ VD  + L              +GGV V S D +I+  NTL++RLD++ ++K+PEIRK L
Sbjct:   87 RNDLISELLNDAKLRLSRIVTDPEFYQGLLDKLVLQGLLRLLEPVVIVRCRPQDHFLVEAAVQRAIPQYT-AVSHRCVEVQVDKEVQL----------ATDTTGGVEVYSSDQRIMVSNTLESRLDLLSQQKMPEIRKAL 215          
BLAST of CV884952 vs. ExPASy Swiss-Prot
Match: VATE_HETSC (V-type proton ATPase subunit E OS=Heterodera schachtii PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.183e-15
Identity = 48/140 (34.29%), Postives = 77/140 (55.00%), Query Frame = 3
Query:    3 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 422
            +DD + N++E A   +  +S D   Y  +LKGL++Q L +L E  V+LRCRK D  +V  +L    EE  Q+   +  E+ +D+  +L              +GGV + ++DGKI   +TL+ARLD++  K  P++R  L
Sbjct:   87 RDDHLKNVLEEARANLSKISADRERYPAILKGLLLQGLFQLLESKVVLRCRKKDEEMVARILPECLEE-VQRTWGNRSEVKIDNEHFL----------SPESAGGVELLAKDGKIRVSSTLEARLDLIADKITPQVRTAL 215          
The following BLAST results are available for this feature:
BLAST of CV884952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
VATE_CITUN2.054e-6891.78V-type proton ATPase subunit E OS=Citrus unshiu GN... [more]
VATE_CITLI1.331e-6791.10V-type proton ATPase subunit E OS=Citrus limon GN=... [more]
VATE_GOSHI5.815e-4766.03V-type proton ATPase subunit E OS=Gossypium hirsut... [more]
VATE_SPIOL6.429e-4667.12V-type proton ATPase subunit E OS=Spinacia olerace... [more]
VATE1_ARATH3.528e-4463.70V-type proton ATPase subunit E1 OS=Arabidopsis tha... [more]
VATE_MESCR3.302e-4267.14V-type proton ATPase subunit E OS=Mesembryanthemum... [more]
VATE3_ARATH4.312e-4259.87V-type proton ATPase subunit E3 OS=Arabidopsis tha... [more]
VATE2_ARATH8.991e-4058.04V-type proton ATPase subunit E2 OS=Arabidopsis tha... [more]
VATE2_BOVIN6.270e-1736.43V-type proton ATPase subunit E 2 OS=Bos taurus GN=... [more]
VATE_HETSC1.183e-1534.29V-type proton ATPase subunit E OS=Heterodera schac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011E12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884952 ID=CV884952; Name=CV884952; organism=Citrus sinensis; type=EST; length=623bp
CTCAGGATGATTTGGTCAGTAATATGATGGAGGCAGCATCAAAGGAGGTT
TTGAATGTGAGTCGCGATCACAATTCATATAAGAAGCTTTTGAAGGGTCT
TATTGTTCAGAGTTTGCTCAGGCTGAAAGAGCCAGCTGTGTTACTGAGAT
GCCGCAAAGATGACCATCATTTGGTGGAGTCTGTTTTGGAGTCAGCAAAA
GAGGAATATGCACAGAAATTGCAGGTTCACCCACCAGAGATAATTGTGGA
TCATCACATCTATCTTCCGCCTGGCCCTGGCCATCATAATGCCCATGGTC
CATCCTGCTCAGGAGGTGTCGTGGTGGCTTCTCGAGATGGGAAGATAGTA
TGTGAGAATACCCTTGATGCACGGTTGGATGTTGTGTTCCGTAAAAAACT
TCCTGAGATCCGGAAGCAGCTCGTCAGTCAGGTTGCTGCATGATGAGTTA
ATTTGAATTGTTTGTCACCCTCTGATTATTCATGTCCGAAGTTTTTAAGT
TTAGTTATTGACCATAAAATTTATTATTTCCTGTTTGTTTGCATATTTTA
AATTATAATGTTTGCAGAATATCTTTATTTGTGAAAATCAGTGAATCTGT
TCTTGGATTTGGTGCTCAAAAAA
back to top