CV884949

Overview
NameCV884949
Unique NameCV884949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7373_ARATH (UPF0737 protein AFP3 OS=Arabidopsis thaliana GN=AFP3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.127e-22
Identity = 59/108 (54.63%), Postives = 69/108 (63.89%), Query Frame = -1
Query:  236 PVSTTEN----LSPTGSKESKKDVGKPPKPQIQSQNTPSLPHMPCVSTTGNGPNGKTINGFLYRYTK-TEVSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITVIPS 544
            PV  T N     SP+ ++   +++GK     I       +  MP VSTTG+GPNGK INGFLYRY K  EV IVCVCHG+  SPAEFV HAGG DV+ PLKHI V PS
Sbjct:  128 PVQATTNKSVETSPSSAQSQPENLGKEASQNI-------IEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGGGDVAHPLKHIVVNPS 228          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7373_ORYSJ (UPF0737 protein Os03g0419100 OS=Oryza sativa subsp. japonica GN=Os03g0419100 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.875e-19
Identity = 69/169 (40.83%), Postives = 86/169 (50.89%), Query Frame = -1
Query:  236 SNSGKPKTSSKDAQC--------SPPTNCTTNFVQQTALSNAVDCSPAKPKEEVATELHGASSQNPVSTTENLSPTGSKESKKDVGKPPKPQIQSQNTPSLPHMPCVSTTGNGPNGKTINGFLYRYTKTE-VSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITVIPS 715
            S+S  P+    D           SP T+  TN  Q +AL      S  KP     T+      Q+P+ T  +L+   S  S  D+GK             +  MP VS+   GPNG+ I+GFLY+Y K E VSI+CVCHG   SPAEFV HAGG DVS PL+HI V PS
Sbjct:  158 SSSANPQDQGPDGSAICQSTEARSPSTSDDTN--QNSALPPTA--STGKPLNGTVTQ------QSPLRTLGSLTMRTS--STGDIGK------------IMMDMPMVSSKVEGPNGRKIDGFLYKYRKGEDVSIMCVCHGKFHSPAEFVKHAGGGDVSNPLRHIVVNPS 302          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7372_ARATH (UPF0737 protein AFP2 OS=Arabidopsis thaliana GN=AFP2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.092e-17
Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = -1
Query:  233 TELHGASSQNPVSTTENLSPTGSKESKKDVGKPPKPQIQSQNTPSLPHMPCVSTTGNGPNGKTINGFLYRYTK-TEVSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITVIPSA 574
            TE    +  N V+  EN     S++S    GK          +  L  MPCV T G+GPNG+ ++G LY+Y K  EV I+C+CHG+  +PAEFV H GG DV +PL+HI V  S+
Sbjct:  237 TERPSVTRANKVNENENEKRVRSEDSVDRKGKG------MATSTGLVDMPCVFTKGDGPNGRRVDGILYKYGKGEEVRIMCICHGSFLTPAEFVKHGGGGDVDRPLRHIVVNTSS 345          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7372_ORYSJ (UPF0737 protein Os07g0602900 OS=Oryza sativa subsp. japonica GN=Os07g0602900 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.862e-17
Identity = 62/178 (34.83%), Postives = 82/178 (46.07%), Query Frame = -1
Query:  236 GKPKTSSKDAQCSPPTNCTTNFVQQTALSNAVDCSPAKPKEEVATELHGASSQNPVSTTENLSPTGSKESKKDVGKPPKPQIQSQNTP--------------------SLPHMPCVSTTGNGPNGKTINGFLYRYTKTE-VSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITVIPS 706
            G  +   +DA          + V Q + S+   C P +     A  +  +SS N     + L PT S       G+PP      +  P                     +  MP VS+  +GPNG+ I+GFLY+Y K E V IVCVCHG   +PAEFV HAGG DV+ PL+HI V PS
Sbjct:  141 GGGRDDGQDAMYPTGFQLRRSVVSQGSTSS---CMPEQGVGVGAEAMDTSSSDNASCQNKPLPPTASSGGGGG-GRPPANGSMKEQPPLRTLRSLTMRTTSTGDLRKSMMEDMPMVSSRVDGPNGRKIDGFLYKYRKREEVRIVCVCHGNFLTPAEFVKHAGGGDVTNPLRHIVVNPS 314          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7372_WHEAT (UPF0737 protein 2 OS=Triticum aestivum GN=AFP-B1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.177e-17
Identity = 54/121 (44.63%), Postives = 69/121 (57.02%), Query Frame = -1
Query:  236 HGASSQNPVSTTENLSPTGSKESKKDVGKPPKPQIQS--QNTPS--------LPHMPCVSTTGNGPNGKTINGFLYRYTK-TEVSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITVIPS 565
            + AS+QN        SP G   +     +PP   ++S    T S        +  MP VS+  +GPNGK I+GFLY+Y K  EV IVCVCHG   +PAEFV HAGG DV+ PL+HI V P+
Sbjct:  191 NNASNQNKSLPPPAPSPAGKLPNGIVKEQPPLRTLRSLTMRTTSTGDLRKSMMEDMPMVSSKVDGPNGKKIDGFLYKYRKGEEVRIVCVCHGNFLTPAEFVKHAGGGDVTNPLRHIVVNPA 311          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7371_WHEAT (UPF0737 protein 1 OS=Triticum aestivum GN=AFP-A1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.149e-17
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = -1
Query:  236 MPCVSTTGNGPNGKTINGFLYRYTK-TEVSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITVIPS 430
            MP VS+  +GPNGK I+GFLY+Y K  EV IVCVCHG   +PAEFV HAGG DV+ PL+HI V PS
Sbjct:  245 MPMVSSKVDGPNGKKIDGFLYKYRKGEEVRIVCVCHGNFLTPAEFVKHAGGGDVTNPLRHIVVNPS 310          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7371_ARATH (UPF0737 protein AFP1 OS=Arabidopsis thaliana GN=AFP1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.077e-17
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = -1
Query:  233 EVATELHGASSQNPVSTTENLSPTGSKESKK-------DVGKPPKPQIQSQNTPSLPHMPCVSTTGNGPNGKTINGFLYRY-TKTEVSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITVIPSA 583
            E+ T+     +++  STT+    T +K + +       D+    +PQ + ++      MPCV T G+GPNGK ++G LYRY +  EV I+CVCHG   SPA+FV HAGG  V  PL+HI V  S+
Sbjct:  221 ELETKASSDEARSLPSTTQPQQETTTKPTNRLRRLSSVDMNMKMEPQGKGKS-----EMPCVFTKGDGPNGKRVDGILYRYGSGEEVRIMCVCHGDFLSPADFVKHAGGPHVDHPLRHIVVNTSS 340          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7373_WHEAT (UPF0737 protein 3 OS=Triticum aestivum GN=AFP-D1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.059e-16
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = -1
Query:  236 MPCVSTTGNGPNGKTINGFLYRYTK-TEVSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITVIPS 430
            MP VS+  +GPN K I+GFLY+Y K  EV IVCVCHG   +PAEFV HAGG DV+ PL+HI V PS
Sbjct:  240 MPIVSSKVDGPNSKKIDGFLYKYRKGEEVRIVCVCHGNFLTPAEFVKHAGGGDVTNPLRHIVVNPS 305          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7371_ORYSJ (UPF0737 protein Os03g0214200 OS=Oryza sativa subsp. japonica GN=Os03g0214200 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.512e-16
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = -1
Query:  239 LPHMPCVSTTGNGPNGKTINGFLYRYTK-TEVSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITVIP 439
            +  MPCV T G  PNGK + GFLY+Y K  EV IVCVCHG+  +PAEFV HAGG DV+ PL+HI V P
Sbjct:  329 MQEMPCVCTKGL-PNGKRVEGFLYKYRKGEEVRIVCVCHGSFLTPAEFVKHAGGGDVANPLRHIVVNP 395          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7376_MAIZE (UPF0737 protein 6 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.022e-15
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = -1
Query:  236 MPCVSTTGNGPNGKTINGFLYRYTKTE-VSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITVIPS 430
            MP VS+   GPN + I+GFLYRY K E V IVCVCHG+  +PAEFV HAGG DV  PL+HI V P+
Sbjct:  220 MPMVSSKVEGPNARRIDGFLYRYKKGEDVRIVCVCHGSFLTPAEFVKHAGGGDVPNPLRHIVVNPA 285          
The following BLAST results are available for this feature:
BLAST of CV884949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
U7373_ARATH1.127e-2254.63UPF0737 protein AFP3 OS=Arabidopsis thaliana GN=AF... [more]
U7373_ORYSJ9.875e-1940.83UPF0737 protein Os03g0419100 OS=Oryza sativa subsp... [more]
U7372_ARATH1.092e-1742.61UPF0737 protein AFP2 OS=Arabidopsis thaliana GN=AF... [more]
U7372_ORYSJ1.862e-1734.83UPF0737 protein Os07g0602900 OS=Oryza sativa subsp... [more]
U7372_WHEAT3.177e-1744.63UPF0737 protein 2 OS=Triticum aestivum GN=AFP-B1 P... [more]
U7371_WHEAT4.149e-1765.15UPF0737 protein 1 OS=Triticum aestivum GN=AFP-A1 P... [more]
U7371_ARATH7.077e-1740.00UPF0737 protein AFP1 OS=Arabidopsis thaliana GN=AF... [more]
U7373_WHEAT2.059e-1663.64UPF0737 protein 3 OS=Triticum aestivum GN=AFP-D1 P... [more]
U7371_ORYSJ3.512e-1661.76UPF0737 protein Os03g0214200 OS=Oryza sativa subsp... [more]
U7376_MAIZE1.022e-1562.12UPF0737 protein 6 OS=Zea mays PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011E10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884949 ID=CV884949; Name=CV884949; organism=Citrus sinensis; type=EST; length=907bp
ACTTTAATCCTCTCCGTTGATACAATTAGATGGAGAAACAGGAAAAAGAA
ATGAAAAAAACTTTAGATGAGTCTCTTCCATTCATTTGTTAGGAGGAGCT
CCAGTTAAGTTAAAAAAAAGTACAAATTAAACCGTCGCCATATCTCATAA
GCCTTGCAGAAAAGTGATGACTGGATAAATTGACATGTGAAGGGAATTTC
ATAGCACCACTTTTGCGGCATCATCATCAAATGGCAGATGGAATGACAGT
AATGTGTTTCAGAGGCTGCGATACATCTGTGCCTCCAGCATGCAGCACAA
ACTCAGCCGGTGAGAATGAGGTTCCATGGCAGACACAGACAATGCTGACC
TCCGTTTTCGTATATCTGTACAGAAACCCATTAATGGTTTTCCCATTGGG
ACCATTCCCTGTTGTTGAAACACATGGCATATGAGGAAGGGAAGGTGTAT
TTTGACTCTGAATTTGCGGTTTGGGAGGCTTGCCCACGTCCTTCTTCGAT
TCTTTTGATCCAGTGGGGGACAGATTTTCGGTAGTTGAGACAGGATTCTG
AGAAGAGGCTCCATGAAGTTCTGTTGCAACTTCTTCCTTAGGTTTAGCCG
GGCTGCAGTCCACCGCATTTGATAGAGCCGTTTGCTGCACAAAGTTTGTG
GTACAGTTTGTAGGTGGGCTGCATTGGGCATCCTTAGATGATGTCTTTGG
CTTGCCACTGTTTGAGGGACAATTTGTCATTTCGTCATAAACTTGAGCAG
TCTTCCTGTGTGGGGATGTACTGTGTTCAGATTGGCCCTTCGTATCATCT
GCCTTCGAATTTTGCAATTTCAATTGCTCTGGTGGAGAGTGACTTGAATG
GCTTCTCGTATCACTACTGCCGCCACCTTCATGAGAAGAGCTTCTGTAAT
CCGAAAC
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