CV884946

Overview
NameCV884946
Unique NameCV884946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884946_ssr12 microsatellite CV884946_ssr12:12..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3379 contig Csv1_Contig3379:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884946 vs. ExPASy Swiss-Prot
Match: G3BP1_MOUSE (Ras GTPase-activating protein-binding protein 1 OS=Mus musculus GN=G3bp1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.712e-16
Identity = 67/230 (29.13%), Postives = 106/230 (46.09%), Query Frame = 1
Query:  100 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRP--DSNGSMTK-VTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYFVLNDVFRFXXXXXXXXXXXXXXXXXTAPTANVTEAPEPAHDQDHIPADRAIVIEGEDLDNGPEVCDPSDKEEGSVVEDEIVEPPSNSVQNEVHASVDSAPVA--QGDAPE 768
            PS  +VG  FV QYY +L+Q+P ++HRFY  +S  +    DSNG     V   K I+ +++S N+ +   +I+  DA  +   GV+V V G L+  +   ++F QTF LAP+      ++V ND+FR+                       VTE  E + ++   P +R    E    D+G         +    +E+ +VEP     + E     +  PV+  Q D PE
Sbjct:    6 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGF---------------VTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVVEP-----EPEPEPEPEPEPVSDIQEDKPE 215          
BLAST of CV884946 vs. ExPASy Swiss-Prot
Match: G3BP1_BOVIN (Ras GTPase-activating protein-binding protein 1 OS=Bos taurus GN=G3BP PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.236e-16
Identity = 67/234 (28.63%), Postives = 106/234 (45.30%), Query Frame = 1
Query:  100 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRP--DSNGSMTK-VTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYFVLNDVFRFXXXXXXXXXXXXXXXXXTAPTANVTEAPEPAHDQDHIPADRAIVIEGEDLDNGPEVCDPSDKEEGSVVEDEIVEP---PSNSVQNEVHASVD---SAPVAQGDAPE 768
            PS  +VG  FV QYY +L+Q+P ++HRFY  +S       DSNG     V   K I+ +++S N+ +   +I+  DA  +   GV+V V G L+  +   ++F QTF LAP+      ++V ND+FR+                       +TE  E + ++   P +R    E    D+G         +    +E+ + EP   P    + E  + V    S PV +  APE
Sbjct:    6 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGF---------------ITEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVAEPEPEPEPEPEQEPVSEVQEEKSEPVLEETAPE 224          
BLAST of CV884946 vs. ExPASy Swiss-Prot
Match: G3BP_SCHPO (Putative G3BP-like protein OS=Schizosaccharomyces pombe GN=nxt3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.920e-16
Identity = 45/125 (36.00%), Postives = 70/125 (56.00%), Query Frame = 1
Query:   94 PAPSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTKVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 468
            P      +G  FV++YY  L++ P  +H FY   S L   D   S++     + I+++IL L++++    I   D+  S   G+++ V G ++ K  + +KF QTFFLA Q   GYFVLND+FRF
Sbjct:   11 PVLGKDEIGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGDEGESISLCHGQQEIHNKILDLDFQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQ-PNGYFVLNDIFRF 134          
BLAST of CV884946 vs. ExPASy Swiss-Prot
Match: G3BP1_HUMAN (Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens GN=G3BP1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.981e-16
Identity = 70/243 (28.81%), Postives = 111/243 (45.68%), Query Frame = 1
Query:  100 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRP--DSNGSMTK-VTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYFVLNDVFRFXXXXXXXXXXXXXXXXXTAPTANVTEAPEPAHDQDHIPADRAIVIEGEDLDNG---PEVCDPSDKEEGSVVEDEIVEP---PSNSVQNEVHASVDS---APVAQGDAPEKKSYAS 786
            PS  +VG  FV QYY +L+Q+P ++HRFY  +S       DSNG     V   K I+ +++S N+ +   +I+  DA  +   GV+V V G L+  +   ++F QTF LAP+      ++V ND+FR+                       VTE  E + ++   P +R    E    D+G    +    +D EE   +E+ + EP   P    + E  + +      PV +  APE    +S
Sbjct:    6 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGF---------------VTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEH--LEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSS 231          
BLAST of CV884946 vs. ExPASy Swiss-Prot
Match: G3BP1_PONAB (Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii GN=G3BP1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.449e-15
Identity = 69/243 (28.40%), Postives = 110/243 (45.27%), Query Frame = 1
Query:  100 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRP--DSNGSMTK-VTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYFVLNDVFRFXXXXXXXXXXXXXXXXXTAPTANVTEAPEPAHDQDHIPADRAIVIEGEDLDNG---PEVCDPSDKEEGSVVEDEIVEP---PSNSVQNEVHASVDS---APVAQGDAPEKKSYAS 786
            PS  +VG  FV QYY +L+Q+P ++HRFY  +S       DSNG     V   K I+ +++S N+ +   +I+  DA  +   GV+V V G L+  +   ++F QTF LAP+      ++V ND+FR+                       VTE  E + ++   P +R    E    D+G    +    +D EE   +E+ + EP   P    + E  + +      PV +   PE    +S
Sbjct:    6 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGF---------------VTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEH--LEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETVPEDAQKSS 231          
BLAST of CV884946 vs. ExPASy Swiss-Prot
Match: G3BP2_PONAB (Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii GN=G3BP2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.733e-14
Identity = 46/128 (35.94%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  100 PSAQVVGNAFVEQYYHILHQSPGLVHRFY--QDSSLLSRPDSNGSMTK-VTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYFVLNDVFRF 468
            PS  +VG  FV QYY +L+++P  +HRFY    S +    D++G   + V     I+ ++LSLN+ +   +I+  DA  +   GV+V V G L+     ++KF QTF LAP+      ++V ND+FR+
Sbjct:    6 PSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFRY 133          
BLAST of CV884946 vs. ExPASy Swiss-Prot
Match: G3BP2_MOUSE (Ras GTPase-activating protein-binding protein 2 OS=Mus musculus GN=G3bp2 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.733e-14
Identity = 46/128 (35.94%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  100 PSAQVVGNAFVEQYYHILHQSPGLVHRFY--QDSSLLSRPDSNGSMTK-VTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYFVLNDVFRF 468
            PS  +VG  FV QYY +L+++P  +HRFY    S +    D++G   + V     I+ ++LSLN+ +   +I+  DA  +   GV+V V G L+     ++KF QTF LAP+      ++V ND+FR+
Sbjct:    6 PSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFRY 133          
BLAST of CV884946 vs. ExPASy Swiss-Prot
Match: G3BP2_HUMAN (Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens GN=G3BP2 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.733e-14
Identity = 46/128 (35.94%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  100 PSAQVVGNAFVEQYYHILHQSPGLVHRFY--QDSSLLSRPDSNGSMTK-VTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYFVLNDVFRF 468
            PS  +VG  FV QYY +L+++P  +HRFY    S +    D++G   + V     I+ ++LSLN+ +   +I+  DA  +   GV+V V G L+     ++KF QTF LAP+      ++V ND+FR+
Sbjct:    6 PSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFRY 133          
The following BLAST results are available for this feature:
BLAST of CV884946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
G3BP1_MOUSE1.712e-1629.13Ras GTPase-activating protein-binding protein 1 OS... [more]
G3BP1_BOVIN2.236e-1628.63Ras GTPase-activating protein-binding protein 1 OS... [more]
G3BP_SCHPO2.920e-1636.00Putative G3BP-like protein OS=Schizosaccharomyces ... [more]
G3BP1_HUMAN4.981e-1628.81Ras GTPase-activating protein-binding protein 1 OS... [more]
G3BP1_PONAB1.449e-1528.40Ras GTPase-activating protein-binding protein 1 OS... [more]
G3BP2_PONAB2.733e-1435.94Ras GTPase-activating protein-binding protein 2 OS... [more]
G3BP2_MOUSE2.733e-1435.94Ras GTPase-activating protein-binding protein 2 OS... [more]
G3BP2_HUMAN2.733e-1435.94Ras GTPase-activating protein-binding protein 2 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011E09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884946 ID=CV884946; Name=CV884946; organism=Citrus sinensis; type=EST; length=809bp
CCGAGATCTCCCTCTCTCTCTCTCTCTCTTTCTCTTTCATCCATTCGAGC
TCAAACACTTCCCACAAAACAGATGGCAGCACAAGAAGGCAGTCCAGCTC
CCAGTGCCCAAGTTGTTGGCAATGCCTTTGTGGAGCAATATTACCATATT
CTCCACCAATCCCCAGGATTGGTTCACAGATTTTATCAGGATTCCAGTTT
GCTAAGCCGTCCAGACAGCAATGGTTCTATGACGAAAGTGACAACCATGA
AAGCAATCAATGACAGGATTTTGTCCTTGAATTATGAAGACTACACGGCG
GAGATAAAAACTGCAGATGCTCAGGATTCATATGAGAAAGGGGTGATCGT
TCTAGTGACTGGGTGCTTGACTGGAAAGGACAATGTGAAAAAGAAATTCA
CTCAAACATTCTTTTTAGCTCCACAGGACAAAGGAGGCTACTTTGTCCTG
AATGATGTCTTTAGATTTGTTGAGGAGAATGAGTCATTGGAAAACAATTC
TGACTCAGTAGTTAATGAAACTGCTCCAACAGCCAATGTGACTGAGGCAC
CAGAGCCTGCTCATGATCAAGATCATATTCCAGCAGACCGAGCAATTGTC
ATTGAGGGGGAAGATCTTGATAATGGTCCTGAAGTTTGTGATCCTTCTGA
CAAGGAAGAAGGATCAGTGGTTGAAGACGAAATTGTTGAACCCCCATCTA
ATTCGGTTCAGAATGAAGTTCATGCAAGTGTAGACTCAGCTCCAGTGGCG
CAGGGGGATGCTCCTGAGAAGAAATCATATGCTTCAATTGTGAAAGTGAT
GAAAGGTTA
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