CV884936

Overview
NameCV884936
Unique NameCV884936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3377 contig Csv1_Contig3377:317..1110. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884936 vs. ExPASy Swiss-Prot
Match: LSM4_FAGSY (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.069e-23
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = -3 
Query:  643 VICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRSDRKPP 792
            VICTSKDGDRFWRMP+CYIRGNTIKYLRVPDEVIDKVQEETKSR+DRKPP
Sbjct:   43 VICTSKDGDRFWRMPDCYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPP 92
[Close]
BLAST of CV884936 vs. ExPASy Swiss-Prot
Match: LSM4_TOBAC (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.020e-22
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = -3 
Query:  643 VICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRSDRKPP 792
            VICTSKDGDRFWRMPECY+RGNTIKYLRVPDEVIDKVQEE KSR+DRKPP
Sbjct:   43 VICTSKDGDRFWRMPECYVRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPP 92
[Close]
BLAST of CV884936 vs. ExPASy Swiss-Prot
Match: LSM4_ORYSJ (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.234e-21
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = -3 
Query:  643 VICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEET-KSRSDRKPP 792
            VICTSKDGD+FWRMPECYIRGNTIKYLRVPDEVIDKVQEET KSRSDR+PP
Sbjct:   43 VICTSKDGDKFWRMPECYIRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPP 93
[Close]
BLAST of CV884936 vs. ExPASy Swiss-Prot
Match: LSM4_MOUSE (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.329e-15
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = -3 
Query:  643 VICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRSDRKPP 792
            VICTS+DGD+FWRMPECYIRG+TIKYLR+PDE+ID V+EE      R  P
Sbjct:   43 VICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVREEAAKGRGRGGP 92
[Close]
BLAST of CV884936 vs. ExPASy Swiss-Prot
Match: LSM4_HUMAN (U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 33/44 (75.00%), Postives = 41/44 (93.18%), Query Frame = -3 
Query:  661 VICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR 792
            VICTS+DGD+FWRMPECYIRG+TIKYLR+PDE+ID V+EE  ++
Sbjct:   43 VICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVAK 86
[Close]
BLAST of CV884936 vs. ExPASy Swiss-Prot
Match: LSM4_BOVIN (U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 33/44 (75.00%), Postives = 41/44 (93.18%), Query Frame = -3 
Query:  661 VICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSR 792
            VICTS+DGD+FWRMPECYIRG+TIKYLR+PDE+ID V+EE  ++
Sbjct:   43 VICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVAK 86
The following BLAST results are available for this feature:
BLAST of CV884936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LSM4_FAGSY9.069e-2396.00Probable U6 snRNA-associated Sm-like protein LSm4 ... [more]
LSM4_TOBAC2.020e-2294.00Probable U6 snRNA-associated Sm-like protein LSm4 ... [more]
LSM4_ORYSJ2.234e-2194.12Probable U6 snRNA-associated Sm-like protein LSm4 ... [more]
LSM4_MOUSE5.329e-1570.00U6 snRNA-associated Sm-like protein LSm4 OS=Mus mu... [more]
LSM4_HUMAN9.090e-1575.00U6 snRNA-associated Sm-like protein LSm4 OS=Homo s... [more]
LSM4_BOVIN9.090e-1575.00U6 snRNA-associated Sm-like protein LSm4 OS=Bos ta... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011E04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884936 ID=CV884936; Name=CV884936; organism=Citrus sinensis; type=EST; length=794bp
TTTTTTTTTAGCAACGTCCAAGGACTTATCAAAATTTATTCATCGATATG
CAAGGATAATTATTACAATTCAAACACCTTGACGGTGCGGTGTGTACTAT
ATCTTTGTGCACATCTTCGAGCAGGAATCCACACAGCTTTGCACTTTTTC
TGGGGTGCTCCCGTTGGCACACAAGGAAGAAGCACAGCCGAGCTTGCAGA
AGTATACGGCGTCGGGCAAACAAGCCACATTTTCACCACAACTGAATAAC
CAAAGGTGACTATAAGGCCCTGTTCTAAAACTAACTGGATGAACACGTCT
TGACAATTTGAAACGACAATGAAAAGAAACCAAAATACAAGCTTAATCTA
GTTCTATGCTACAACCCTTAATACATTTGGTAATAAAAATCAACAATATT
AGAAGATGGGGCAAAAATACCTTAAAAAAAAATAGCAAGCTTGCCCTATG
GTGTTCAATAGCAGACTACCCTCGACTTCGCCCTCCCCCTCTGCTCCCAC
CAGGCTTTCCACCAGGCCCACCCCTGCCTCGGCCTCCACCTGCTCCCTTA
GCACCACCATCATCCAGACCACGCCCAATGCCTTTTGTTTGCCTTCCACT
CGCACCATCTTCCCGGCCTCTTCCTCTACCACGCCCAACCCCAGGTGGCT
TACGATCTGATCGACTCTTGGTTTCTTCCTGAACTTTATCAATCACCTCA
TCAGGAACTCGAAGATACTTGATTGTGTTCCCCCGAATATAGCATTCAGG
CATTCTCCAAAATCTATCTCCATCCTTAGATGTACAGATGACTT
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