CV884928

Overview
NameCV884928
Unique NameCV884928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884928_ssr529 microsatellite CV884928_ssr529:529..558. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884928 vs. ExPASy Swiss-Prot
Match: PUM_DROME (Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:   89 NDNLL-VMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 268
            NDN L VMMKDQYANYVVQK+++       + L+++IR H  AL+KYTYGKHI A+ E+ Y
Sbjct: 1368 NDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLEKYY 1428
[Close]
BLAST of CV884928 vs. ExPASy Swiss-Prot
Match: PUM2_MOUSE (Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:   98 LLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 268
            L  MMKDQYANYVVQK+++      R+ ++ +IR H   L+KYTYGKHI+A+ E+ Y
Sbjct:  992 LYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 1048
[Close]
BLAST of CV884928 vs. ExPASy Swiss-Prot
Match: PUM2_HUMAN (Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:   98 LLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 268
            L  MMKDQYANYVVQK+++      R+ ++ +IR H   L+KYTYGKHI+A+ E+ Y
Sbjct:  992 LYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 1048
The following BLAST results are available for this feature:
BLAST of CV884928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUM_DROME1.716e-1157.38Maternal protein pumilio OS=Drosophila melanogaste... [more]
PUM2_MOUSE4.993e-1152.63Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=... [more]
PUM2_HUMAN4.993e-1152.63Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011D11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884928 ID=CV884928; Name=CV884928; organism=Citrus sinensis; type=EST; length=703bp
CATGGCCGCAACAACTCAAGCCTCTCTCTTCGCACCGGCCAACTTCTCCA
CCACCAAATCCTCTGCGCCGTGGAAGCAATCTGAAGAAAATGACAATTTG
TTGGTAATGATGAAGGACCAATATGCAAATTATGTGGTTCAGAAGATTCT
GGAAAAATGCAATGAGAAACTGCGAGAAACATTAATCAGTCGTATCAGAG
TTCATTGTGATGCCTTGAAGAAATATACCTATGGTAAACACATAGTTGCT
CGGTTTGAGCAACTTTATGGTGAAGAATGCTGATGTCCGATCACTGACAT
GCAGAAAGCCAACCCTCGGAAGCGTAGAATGGAAAGTGGAACTTTGTTCG
AATTTCCGGCAAACTCGCGTGTAGACAAAAGCATACACAATACAAGCAGA
ATTGCTGGGGGCTCAAAAGCGTGAGATGAGCAAAGCCTCGTATCATTCTT
TTGCAAAACCATGCCGCTCGGGTGGCTGATCATAATAGTTGCCAGTTTGA
TAGTAGTAAGTAAATAGATGCAAATAACATATATATATATATATATATAT
ATATATATAATCTATGAATTATCTTCATACTCTTGTGTTTATGTAAACCT
GTCTATAGAAATAATTAATGGTGATTGGTCTGATAGTAAGTGTGCTTGGA
TTTTTGCTTTGCAAAATTGTTGGGTCTATAAAGAAGGTAGCAGTTTTATT
TGC
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