CV884926

Overview
NameCV884926
Unique NameCV884926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10867 contig Csv1_Contig10867:727..1600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884926 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.876e-36
Identity = 100/285 (35.09%), Postives = 145/285 (50.88%), Query Frame = 2
Query:   11 CKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNE-XXXXXXXXXXXXXXXXXXXTKQIKATSLAYCL--VDRDSPASGVLE--FNSARGGDAVTAPLIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMD-EAGDGGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVAL-FDTCYDF-SGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPTSSALSIIGNVQQQGTRVSFDLANNRVGFTPHKC 841
            C++L    C  N C Y   YGDGS T G + TET++FG S S+  I  GCG +N+                      Q+  T  +YC+  +   +P++ +L    NS   G   T  LI++ ++ TFYY+ L G SVG   + I PS F ++   G GGII+D GT +T     AY S+R  F+    NL   +G +  FD C+   S   ++++PT  +HF  G  L+LP++NY I   S G  C A   +S  +SI GN+QQQ   V +D  N+ V F   +C
Sbjct:  155 CQALSSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFG-SVSIPNITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVTKFSYCMTPIGSSTPSNLLLGSLANSVTAGSPNTT-LIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQI-NLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGD-LELPSENYFIS-PSNGLICLAMGSSSQGMSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434          
BLAST of CV884926 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.853e-35
Identity = 100/286 (34.97%), Postives = 142/286 (49.65%), Query Frame = 2
Query:   11 CKSLDVSACRANRCLYQVAYGDGSFTVGDLVTETVSFGNSGSVKGIALGCGHDNEXXXXXXXXXXXXXXXXXXXT-KQIKATSLAYCLVDRDSPASGVLEFNSARGGDAVTAP---LIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSLRDSF---VRLAGNLKPTSGVALFDTCYDF-SGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPTSS-ALSIIGNVQQQGTRVSFDLANNRVGFTPHKC 841
            C+ L    C  N C Y   YGDGS T G + TET +F  S SV  IA GCG DN+                      Q+     +YC+    S +   L   SA  G    +P   LI +    T+YY+ L G +VGG  + IP S F++ + G GG+I+D GT +T L   AYN++  +F   + L    + +SG++   TC+   S   +V+VP +S+ F  G  L+L  +N LI   + G  C A   +S   +SI GN+QQQ T+V +DL N  V F P +C
Sbjct:  156 CQDLPSETCNNNECQYTYGYGDGSTTQGYMATETFTFETS-SVPNIAFGCGEDNQGFGQGNGAGLIGMGWGPLSLPSQLGVGQFSYCMTSYGSSSPSTLALGSAASGVPEGSPSTTLIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLS---TCFQQPSDGSTVQVPEISMQFDGG-VLNLGEQNILIS-PAEGVICLAMGSSSQLGISIFGNIQQQETQVLYDLQNLAVSFVPTQC 435          
The following BLAST results are available for this feature:
BLAST of CV884926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR4.876e-3635.09Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR1.853e-3534.97Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011D10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884926 ID=CV884926; Name=CV884926; organism=Citrus sinensis; type=EST; length=873bp
CGCTCCTCAGTGTAAATCCCTCGACGTGTCCGCTTGTCGTGCGAACAGGT
GCCTCTACCAAGTGGCGTACGGTGATGGGTCTTTTACCGTGGGTGATTTG
GTGACTGAAACGGTGTCGTTTGGAAACAGCGGGAGCGTGAAGGGTATCGC
TTTGGGTTGCGGTCATGATAATGAAGGGCTCTTTGTTGGATCTGCCGGCT
TGCTTGGACTTGGGGGTGGCATGCTCTCTCTTACTAAGCAAATTAAAGCG
ACGTCATTGGCTTACTGCTTGGTGGACCGTGACTCTCCCGCCTCTGGTGT
TCTCGAGTTCAACTCGGCACGAGGCGGTGACGCGGTCACGGCTCCGTTGA
TTAGGAACAAAAAAGTTGACACGTTCTATTACGTGGGGCTCACTGGATTC
AGCGTCGGTGGTCAGGCAGTCCAAATCCCACCATCGCTTTTTGAAATGGA
CGAAGCAGGCGACGGCGGGATTATTGTTGATTGTGGAACCGCCATAACTC
GCCTGCAGACTCAGGCCTACAACTCCCTCCGCGACTCTTTCGTCAGGCTG
GCGGGTAACTTGAAACCCACCAGCGGGGTCGCTTTATTCGACACGTGCTA
CGATTTCTCCGGATTAAGGAGTGTTAGGGTCCCAACGGTGTCGCTTCACT
TCGGTGCTGGAAAAGCTCTTGATTTACCCGCCAAAAATTACTTGATTCCA
GTAGACTCAGCTGGGACTTTCTGTTTCGCATTCGCTCCAACGTCGTCGGC
TCTGTCAATTATTGGCAACGTGCAGCAACAGGGAACACGTGTCAGTTTTG
ATTTGGCGAACAATCGCGTCGGGTTCACTCCCCATAAGTGTTAGGCATTT
TCGGAACCCATAATTACCTTGTT
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