CX069494
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069494 vs. ExPASy Swiss-Prot
Match: VPS35_MOUSE (Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23 Identity = 66/159 (41.51%), Postives = 94/159 (59.12%), Query Frame = 3 Query: 3 KAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMKS-ESTTLDPADNAFFAST 461 KAQ+ AI LIIGT +R+ F EN + L + +++LLKKPDQ RAV C+HLFW D++G + G+RV+ CLK+AL+IAN S V LF+EILN+Y+YF+EK N +T + LI+ I ++ + ES+ N F +T Sbjct: 622 KAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNT 773
BLAST of CX069494 vs. ExPASy Swiss-Prot
Match: VPS35_HUMAN (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23 Identity = 66/159 (41.51%), Postives = 94/159 (59.12%), Query Frame = 3 Query: 3 KAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMKS-ESTTLDPADNAFFAST 461 KAQ+ AI LIIGT +R+ F EN + L + +++LLKKPDQ RAV C+HLFW D++G + G+RV+ CLK+AL+IAN S V LF+EILN+Y+YF+EK N +T + LI+ I ++ + ES+ N F +T Sbjct: 622 KAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNT 773
BLAST of CX069494 vs. ExPASy Swiss-Prot
Match: VPS35_BOVIN (Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23 Identity = 66/159 (41.51%), Postives = 94/159 (59.12%), Query Frame = 3 Query: 3 KAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMKS-ESTTLDPADNAFFAST 461 KAQ+ AI LIIGT +R+ F EN + L + +++LLKKPDQ RAV C+HLFW D++G + G+RV+ CLK+AL+IAN S V LF+EILN+Y+YF+EK N +T + LI+ I ++ + ES+ N F +T Sbjct: 622 KAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNT 773
BLAST of CX069494 vs. ExPASy Swiss-Prot
Match: VPS35_SCHPO (Vacuolar protein sorting-associated protein 35 OS=Schizosaccharomyces pombe GN=vps35 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 4.513e-19 Identity = 51/139 (36.69%), Postives = 79/139 (56.83%), Query Frame = 3 Query: 9 QVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV----DDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMKS 413 Q + +IIG LQ+ F +++ DTL K T Y+++LLKKPDQC +Y SHL+W +D +D +RVL CL+++L+IA+A + LF+ IL +Y Y++++ I A I LI+L M+S Sbjct: 596 QYQQLLMIIGKLQKTRNFSVDDYDTLITKCTLYASKLLKKPDQCCGIYLASHLWWQVASGEDSRPFQDPKRVLECLQKSLKIADACMDQLTSLK-------LFINILERYFYYYDQHCESIIAKHISGLIDLTEQNMRS 727
BLAST of CX069494 vs. ExPASy Swiss-Prot
Match: VPS35_YEAST (Vacuolar protein sorting-associated protein 35 OS=Saccharomyces cerevisiae GN=VPS35 PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 6.517e-18 Identity = 58/152 (38.16%), Postives = 89/152 (58.55%), Query Frame = 3 Query: 3 KAQVTAIHLIIGTLQRI-SVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFW------VDDQDGI-----KDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFF---EKGNTQITASAIQSLIELITSEMKS 413 K Q+ A+ I +LQ+ S++ D+L + T + ++LLKK DQCRAVY CSHL+W + +++GI +DG+RVL CL+R+LR+A++ + L VEILN+ LY+F ++ T I+ I LIELI + +KS Sbjct: 688 KTQLQALIYIAQSLQKTRSLYKEAYYDSLIVRCTLHGSKLLKKQDQCRAVYLCSHLWWATEISNIGEEEGITDNFYRDGKRVLECLQRSLRVADSIMD-------NEQSCELMVEILNRCLYYFIHGDESETHISIKYINGLIELIKTNLKS 832
BLAST of CX069494 vs. ExPASy Swiss-Prot
Match: VPS35_DICDI (Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.700e-13 Identity = 49/146 (33.56%), Postives = 78/146 (53.42%), Query Frame = 3 Query: 3 KAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQD-GIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMKSESTTLDPA 437 KAQV A+ L+I TL +S+ E ++L + ++RLL DQ + + CSHLFWVD+ ++ + VL LK+AL I ++ SS + FV+ILN+ L++ +K + + L+ELI + E+ DPA Sbjct: 627 KAQVMALQLLISTLNSLSIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALKKALSI---------ISNESSPGLGTFVDILNECLFYCDKETDAVPIQFVSDLVELIRTTHVKEA---DPA 760 The following BLAST results are available for this feature:
BLAST of CX069494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069494 ID=CX069494; Name=CX069494; organism=Citrus sinensis; type=EST; length=468bpback to top |