CV884895

Overview
NameCV884895
Unique NameCV884895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3375 contig Csv1_Contig3375:1..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884895 vs. ExPASy Swiss-Prot
Match: FB92_ARATH (F-box protein At1g78280 OS=Arabidopsis thaliana GN=At1g78280 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.334e-44
Identity = 100/222 (45.05%), Postives = 130/222 (58.56%), Query Frame = -3 
Query:  343 VDEYIPDDF-VKLLDIYQDENGLNKVCKPCSWIHSDIMDDNVYMEPCCASSRSNGNAADTGPMVNGSINGYDEFGEAKSWHCSHIIDFSNLSIG--------------------------DPIYDVIPIHLDIFRGDSSLFKQFLESYKLPLVR-RMQQHG------SGGGKFSRLSYHAMCYCILHDDNVLGTIFSTWKELRTAKSWEEVEMTVWGELNNY 906
            +DEYIPDDF V LL ++++ NG +++ KPC+WIHSD+MDDN++MEP    S                       G+  SW  SHI+DFS+L+IG                          DPI D+IPI+LD+FRGD+ L K+ LE+Y LPL+R R  ++G      S   K    SY  MCYCILH++NVLG+IFS W ELRTA+SWE+VE TVW  LN Y
Sbjct:  750 IDEYIPDDFFVDLLHVFKETNGGDEI-KPCTWIHSDVMDDNIHMEPYADDSVD---------------------GQHNSWRPSHILDFSDLTIGKSYLRDISQIHNPNAEISERVEEIAGDPICDLIPIYLDVFRGDADLLKKLLENYGLPLIRSRSSENGTTKTADSTRKKVLSPSYRTMCYCILHEENVLGSIFSIWDELRTAESWEQVEQTVWSLLNTY 949
The following BLAST results are available for this feature:
BLAST of CV884895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB92_ARATH2.334e-4445.05F-box protein At1g78280 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884895 ID=CV884895; Name=CV884895; organism=Citrus sinensis; type=EST; length=908bp
TTATTTAAAGTTGGAGCCCCTACGTTACGCTAATCATAACGTACATCCAC
ACACAACAACAGTACCCATGGTGGAATCCGCTACTGTTGCTGTATGTGGC
GTACGTTACGATTAACGTAACGTAGCACTGGCCTAAAAAGTTTATTATTA
TGAAATCTAATTTAAAAGCGATTAATTGAGAATCAAAGCAATCCCATACA
TACCCCATAGCTTATTACAAGAGAAAATTAGTGACGAAAAAGATGAGGGA
TTTCCGTAAGTTAAACATGGAACTTAAATATGCACAAATCAAGGCTTCAA
ATAAATGAATGACAAATGCAAAAATGATCAAGCGTAGCCCTTGTAGTTAT
TGAGTTCTCCCCATACTGTCATCTCAACTTCTTCCCACGACTTAGCCGTC
CTGAGTTCTTTCCATGTACTGAAAATAGTTCCCAATACATTATCGTCATG
CAAAATGCAGTAGCACATTGCATGGTATGAAAGTCGTGAAAACTTGCCGC
CTCCTGATCCATGCTGTTGCATTCTTCTCACTAAAGGAAGTTTGTAACTT
TCTAAAAATTGCTTAAAGAGAGAAGAGTCACCTCTAAAGATATCTAAATG
TATAGGGATCACGTCATAAATGGGATCACCGATAGAAAGATTACTAAAAT
CAATTATGTGGCTACAATGCCAAGACTTTGCTTCTCCAAATTCATCATAG
CCATTTATGGAGCCATTGACCATTGGGCCAGTATCTGCAGCATTTCCATT
TGAGCGTGAGCTAGCACAACATGGTTCCATATAAACATTGTCATCCATGA
TATCCGAGTGTATCCAGGAGCAAGGTTTGCAAACTTTATTCAGGCCATTC
TCATCCTGGTAGATGTCAAGCAACTTCACAAAATCATCTGGGATGTATTC
ATCAACTT
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