CV884894

Overview
NameCV884894
Unique NameCV884894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884894_ssr252 microsatellite CV884894_ssr252:252..266. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3374 contig Csv1_Contig3374:1..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884894 vs. ExPASy Swiss-Prot
Match: FB92_ARATH (F-box protein At1g78280 OS=Arabidopsis thaliana GN=At1g78280 PE=2 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 5.986e-60
Identity = 112/185 (60.54%), Postives = 141/185 (76.22%), Query Frame = 3
Query:  300 KDRRPHALGDLKIIPDEIICSMLEHLTPRDVGRLACVSSVMYIFCNEEPLWMSLCLKKASGLLQYKGSWKKTALHLEDPPIEYDESCTRLLHFDGFYSPFLYRRYYRCHTVLDGFSFDSQLVKRKKIVTREEFDREC-AEEP-------ILLSGLADTWPARNTWTIDQLLTRYGDTAFRISQRS 830
            +DRRP ALG L ++PDE IC +LE+L PRD+  LACVSSVMYI CNEEPLWMSLCL++A G L+YKGSWKKT LHLE    E D +  +  HFDGF S +LY+R+YRC+T LDGFSFD+  V+R++ ++ +EF +E  A++P       +LLSGLAD+WPA NTWTIDQL  +YG+  FRISQRS
Sbjct:    7 RDRRPDALGSLSVLPDETICVLLEYLAPRDIAHLACVSSVMYILCNEEPLWMSLCLRRAKGPLEYKGSWKKTTLHLEGVTQEND-AYRKCFHFDGFMSLYLYKRFYRCNTSLDGFSFDNGNVERRRNISLDEFSKEYDAKKPVKFQSLLVLLSGLADSWPASNTWTIDQLSEKYGEVPFRISQRS 190          
BLAST of CV884894 vs. ExPASy Swiss-Prot
Match: FB252_ARATH (F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.798e-17
Identity = 52/172 (30.23%), Postives = 84/172 (48.84%), Query Frame = 3
Query:  309 RPHALGDLKIIPDEIICSMLEHLTPRDVGRLACVSSVMYIFCNEEPLWMSLCLKKASGLLQYKGSWKKTALHLEDPPIEYDESCTRLLHFDGFYSPFLYRRYYRCHTVLDGFSFDSQLVKRKKIVTREEFDRECAE--EPILLSGLADTWPARNTWTIDQLLTRYGDTAFRI 818
            R   LG+L+I+ DE++  +L  L    +G LA V+   YIF N EPLW +L L++  G   + GSW+ T +    P  ++       L    FYS +L++ +   +  +         + R + ++ E+F  +  E  +P+LL G  D WPA   W+ D L    GD  F +
Sbjct:   76 RNTGLGNLQILSDELVLDILGLLGANHLGVLATVTKSFYIFANHEPLWRNLVLEELKGDFLFNGSWRSTYVAAYHPKFKFAGDGESNLKIIDFYSDYLFQSWLCANLEMKPKWLRRDNITRVRGISVEDFITKFEEPNKPVLLEGCLDGWPAIEKWSRDYLTKVVGDVEFAV 247          
The following BLAST results are available for this feature:
BLAST of CV884894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FB92_ARATH5.986e-6060.54F-box protein At1g78280 OS=Arabidopsis thaliana GN... [more]
FB252_ARATH4.798e-1730.23F-box protein At5g06550 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884894 ID=CV884894; Name=CV884894; organism=Citrus sinensis; type=EST; length=840bp
TTCAAAAATAAAAATAAAAAAGGAAAAAATCTTTAAAAGGTACCAAGAAA
CGGTCCAGCCGCGGCCCACGTGCAACAAACACGTTAAGAGAATCTCCACG
CGCCCTCATCATCGTTAGAGTCTACGCGAATCTTGCTCAATGCCCGCCAT
CTTTGCAAGCTGCAAAACGCCGCGTTCTATCTACGCAAACATTTAAAAAG
AGCGCAAACTAAAAAACTACGGAGATAAAAGCGATTCGATTCGGTAGTGT
CGCAAAGCAAAGCAAATCAATGCAGAATTCTGATCAAGCACTCCCGGTGA
AAGATCGTCGACCTCATGCACTCGGCGATCTTAAAATCATTCCCGATGAA
ATCATCTGCTCTATGTTGGAACATCTCACTCCTCGCGACGTCGGTCGTCT
CGCCTGCGTTAGCAGTGTGATGTATATATTTTGTAATGAAGAGCCTCTGT
GGATGAGTCTCTGTCTTAAGAAAGCAAGTGGTCTACTTCAGTACAAAGGC
TCTTGGAAGAAAACAGCTTTGCATTTAGAGGATCCACCAATTGAATATGA
TGAATCATGCACGAGGCTGTTGCATTTTGATGGATTCTACTCACCATTCT
TATACAGAAGATATTACAGGTGCCATACTGTATTGGATGGCTTCTCTTTT
GATAGTCAACTTGTGAAAAGAAAGAAGATTGTAACTCGCGAGGAGTTTGA
TCGTGAGTGTGCTGAAGAACCGATTTTGCTTAGTGGATTGGCGGATACTT
GGCCTGCGAGGAATACATGGACTATTGACCAGCTATTGACCAGATATGGA
GATACAGCATTTAGGATTTCTCAAAGGAGTGTTCGGAGCA
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