CV884891

Overview
NameCV884891
Unique NameCV884891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length953
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3373 contig Csv1_Contig3373:690..1642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884891 vs. ExPASy Swiss-Prot
Match: YI01_SCHPO (Putative amidase C869.01 OS=Schizosaccharomyces pombe GN=SPAC869.01 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.862e-23
Identity = 87/318 (27.36%), Postives = 139/318 (43.71%), Query Frame = -2
Query:   89 VVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDXATRAASEYIPR-GGYKQFL-RPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNIN---------SLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIK-------EYGQDFFLLAEATNGIGKKEKAAILNLEKFTRDGFEKLMTRNKLDALVTPGYAVSTLL------------AVGGFPGINVPAVYAGDGEPFGICFGGLKGSEPKLLEVAYGFEQATKIRKPPSF 952
            VVGLKPT+GLTSR GVIP +  QD+ GPI RTV DA YV  ++ G D  D  T   +   P  G Y +FL     L+G R G+     +   +   + ++ +  +  + + GA+V ++    N++          L S+   E T +  +F   I +YL E+  + + SL +++ +NNK+   E  K         GQD FL +    G+  +     +   + T          N  D      + ++ LL            A  G+P I +P     +G PFG+        EP+L++     E   + +  P F
Sbjct:  256 VVGLKPTVGLTSRYGVIPESEHQDTTGPIARTVRDAVYVFQSMWGIDENDIYTLNQTGKTPEDGDYMKFLSNKTSLEGARFGLPWKRLWQNAKADEIDRLLE-VVKQIEEAGAIVYNNTNFYNLDVISNDGWNWELGSVNESEYTVVKVDFYNNIKSYLSEVKNTEIHSLEDIVEYNNKYMGTEGGKPNIVPAFSSGQDGFLASLEWGGVKNETYWQAVEYVRRTSQDEGIDYALNYTDPKTNDSFILNGLLVPSGTSITYQQAAKAGYPMITLPIGVKTNGRPFGLGIMHSAWQEPQLIKYGSAIEDLLQYKAKPKF 572          
BLAST of CV884891 vs. ExPASy Swiss-Prot
Match: GATA_MICAN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.415e-16
Identity = 92/323 (28.48%), Postives = 134/323 (41.49%), Query Frame = -2
Query:   89 VVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDXATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEG--SPLAQVFDHHLHTLRQEGALVID----HLEIGNINSLNSIANDETTAMLAEF---KLAINAYLKELVTSPVRSLAEVIAFNNK----FSDLEKIKEYGQDFFLLAEATNGIGKKEKAAILNLEKFTRDGFEKLMTRNKLDALVTPGYAVSTLLA---------------------VGGFPGINVPAVYAGDGEPFGICFGGLKGSEPKLLEVAYGFEQATKIRK-PPSF 952
            VVGLKPT GL SR G++      D +GP  RTV DAA +L AIAG+D  D    + S  +P   Y QFL+   LKG ++G+++     F EG    +A+  +  L  L+  GA + +        G + +   IA  E +A LA +   K  I      L+    ++ A+      K             Y   ++L         K +K   L  E F R           +D LV+P    +   A                     + G PG+++P  + G G P G+   G    E +L  VA+ +EQAT   K  PSF
Sbjct:  184 VVGLKPTYGLVSRFGLVAYASSLDQIGPFGRTVEDAAILLQAIAGYDPQD----STSLNLPIPDYSQFLKT-SLKGLKIGVIKE---TFGEGLDQVVAEAVNQALAQLKALGATIKEISCPRFRYG-LPTYYIIAPSEASANLARYDGVKYGIREDADSLIDMYTKTRAKGFGAEVKRRIMLGTYTLSAGYYDAYYL---------KAQKVRTLIKEDFDR-------AFQSVDVLVSPTSPTTAFKAGEKTADPLSMYLSDLMTIPVNLAGLPGLSLPCGFDGQGLPIGLQLVGNVLREDQLFHVAHAYEQATDWHKRQPSF 481          
BLAST of CV884891 vs. ExPASy Swiss-Prot
Match: GATA_CYAP8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 8801) GN=gatA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.695e-14
Identity = 91/321 (28.35%), Postives = 137/321 (42.68%), Query Frame = -2
Query:   95 VVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDXATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEG--SPLAQVFDHHLHTLRQEGALVIDHLEIG----NINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDF---FLLAEATNGIGKKEKAAILNLEK---FTRDGFEKLMTRNKLDALVTPGYAVSTLLA---------------------VGGFPGINVPAVYAGDGEPFGICFGGLKGSEPKLLEVAYGFEQATK--IRKPP 952
            VVGLKPT GL SR G++      D +GP  RTV D A VL AIAG+D  D    + S  +P   Y  FL P  LKG ++GI+      F EG  S +A+  +  +  L+  GA  I+ +        + +   IA  E +A LA +  A+   ++E         A ++   NK     + K +G +     ++   T   G  + A  L  +K     +  F+K      +D LV P    +   A                     + G PG+++P  +   G P G+        E KL  V Y +EQ+T+   +KPP
Sbjct:  184 VVGLKPTYGLVSRFGLVAYGSSLDQIGPFGRTVEDVAIVLGAIAGYDAKD----STSLKLPIPDYTTFLNP-SLKGVKIGIIEE---TFGEGLDSIVAETVNKAIEQLQALGA-TIERISCPRFRYGLPAYYIIAPSEASANLARYD-AVKYGIRE-------EAATLLEMYNK----TRAKGFGSEVKRRIMIGTYTLSAGYYD-AYYLKAQKVRTLIKQDFDKAF--ESVDVLVCPTSPTTAFKAGEKTDDPLSMYLSDLMTIPVNLAGLPGMSIPCGFDQQGLPIGLQLVSNVLEEGKLFNVGYAYEQSTEWHKQKPP 480          
BLAST of CV884891 vs. ExPASy Swiss-Prot
Match: GATA_ALKMQ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alkaliphilus metalliredigens (strain QYMF) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.252e-11
Identity = 83/326 (25.46%), Postives = 132/326 (40.49%), Query Frame = -2
Query:  101 VGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDXATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDH---LEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDFFLLAEATNGIGKKEKAAI-------------------LNLEKFTRDGFEKLMTRNKLDALVTP-------------GYAVSTLLA--------VGGFPGINVPAVYAGDGEPFGICFGGLKGSEPKLLEVAYGFEQATKIRK 949
            VGLKPT GL SR G+I      D +GP  +TV D A  L  + G D  D +T    E  P   Y + L   G+KG ++GI +  FF       ++      +  L Q GA+V +    +    +++   I++ E ++ LA +                    + + + ++ +  E I+E      +L   + G GK+ K  I                   ++  K TR+ F+K       D ++TP             G  +   LA        + G P I++P  ++ +  P G+   G   SE KLL+ AYG EQ   I K
Sbjct:  189 VGLKPTYGLVSRFGLIAFASSLDQIGPFTKTVKDCALSLQVMQGNDPLD-STSIQQE--PMDDYVKDL-DKGVKGLKVGIPKE-FFQEGLNIEISDSIKEAIKVLEQLGAVVEEFSLPVTDSGLSAYYIISSAEASSNLARY--------------------DGVRYGHRAAVYEGIEE-----MMLNSRSEGFGKEVKRRIMLGTYVLSSGYYDAYYKKAMDFRKKTRNVFKKAF--ESYDVILTPTSPVLPFTIGEKTGDPLEMYLADIYTVNVNIAGVPAISIPCGFSKEKLPIGLQLIGDHYSEKKLLQAAYGLEQELGIFK 482          
BLAST of CV884891 vs. ExPASy Swiss-Prot
Match: GATA_PROM4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9211) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.635e-11
Identity = 85/311 (27.33%), Postives = 132/311 (42.44%), Query Frame = -2
Query:  107 VVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDXATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIG------NINSLNSIANDETTAMLAEFKLAINAYLK--ELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDFFLLAEATNGIGKKEKAAILNLEKFTRDGFEKLMTRNKLDALVTP-----------------GYAVSTLLAV----GGFPGINVPAVYAGDGEPFGICFGGLKGSEPKLLEVAYGFEQATKI 952
            VVGLKPT G  SR G++      D VGP   +V DAA VL  IAG D  D  +    + +P   + ++     +KG R+G+++  F    EG  L +V +  L    Q  +L  + +++        I +   IA  E +A LA +      Y +  E   S + SL+    F ++      I  Y     L A   +   KK +     + +   + FE      K+D L+TP                    +S LL +     G P I+VP  +  +G P G+   G    E +LL+VA+ +EQA  +
Sbjct:  183 VVGLKPTYGRVSRWGLVAFASSLDQVGPFTTSVEDAAEVLQVIAGKDPLD--STCLDKPVP--NFSEYF-SDSIKGLRIGLIKECF--EQEGISL-EVKESVLKAANQLQSLGAELIDVSCPRFNDGIATYYVIAPSEASANLARYDGVKYGYRQHGEENLSAMTSLSRAKGFGSEVQRRILIGTYA----LSAGYFDAYYKKAQKVRTLISRDFANSFE------KVDLLLTPTSPSTAFKAGSHDNDPLAMYLSDLLTIPVNLAGLPAISVPCGFDKEGLPIGLQLIGDVLGEQRLLQVAHHYEQAANV 475          
BLAST of CV884891 vs. ExPASy Swiss-Prot
Match: GATA_CLONN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium novyi (strain NT) GN=gatA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.115e-11
Identity = 77/324 (23.77%), Postives = 128/324 (39.51%), Query Frame = -2
Query:  101 VVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDXATRAASEYIPRGGYKQFLRPHGLKGKRLGIVRNPFFNFDEGSPLAQVFDHHLHTLRQEGALVIDHLEIGNINSLNSIANDETTAMLAEFKLAINAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDFFLLAEATNGIGKKEKAAI-------------------LNLEKFTRDGFEKLMTRNKLDALVTPGYAVSTL---------------------LAVGGFPGINVPAVYAGDGEPFGICFGGLKGSEPKLLEVAYGFEQATKIRK 952
            VVGLKPT G  SR GVI      D VG I R V D A + + I+GFD  D    + S  +    YK+ L+   L G R+G+ +  FF  D    + +  +  +  L + GA +        I SL           LAE+ L+    +     S   +  + I +  + + L+K ++       +     G G++ K  I                   L +    ++ F++++   ++DA++TP   V+                        ++ G P I++P  ++  G P G    G    E  L  + Y +EQ+T   K
Sbjct:  188 VVGLKPTYGRISRYGVISFASTLDQVGTIGRDVTDCAILTEVISGFDKRD----STSARVAVPNYKESLK-KDLTGIRIGLPKE-FFKEDLDESIRKQIEDAIKILEKNGAEI-------KICSL----------PLAEYSLSAYYIISTAEASSNLARIDGIRYGRRINTLDKHED-----IYIQSRNEGFGEEVKKRIMLGTYVLSKGCYEKYYEKALKVRTLIKEDFKRVL--KEVDAIITPTSKVTAFKFGERTKEVLSMYSSDEYTVPASIAGLPAISIPCGFS-KGLPVGFQLIGDYFREDILFNIGYSYEQSTDFHK 480          
The following BLAST results are available for this feature:
BLAST of CV884891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
YI01_SCHPO1.862e-2327.36Putative amidase C869.01 OS=Schizosaccharomyces po... [more]
GATA_MICAN6.415e-1628.48Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CYAP82.695e-1428.35Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ALKMQ1.252e-1125.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_PROM41.635e-1127.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_CLONN8.115e-1123.77Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884891 ID=CV884891; Name=CV884891; organism=Citrus sinensis; type=EST; length=953bp
GTTGAATTTTATTTGATAGAATCTAATAGTTCAAGTTACCCCTGCATTAC
GATAGTAGGGGGTTTTCGAAAATGGATATTCAAGACTTGAATGAAGGAGG
CTTCCTAATTTTGGTAGCTTGCTCAAAGCCATAGGCAACCTCAAGGAGCT
TTGGCTCTGAACCCTTCAATCCTCCAAAACAAATGCCAAAAGGTTCACCA
TCACCAGCATATACAGCAGGAACATTGATTCCTGGGAACCCACCGACTGC
CAGAAGCGTAGAAACAGCATATCCTGGTGTCACCAATGCGTCAAGCTTGT
TCCTGGTCATCAGCTTCTCAAAACCATCTCTTGTAAACTTTTCTAAATTC
AGTATTGCCGCCTTCTCTTTTTTGCCGATTCCATTTGTTGCTTCTGCTAA
CAGAAAGAAGTCCTGGCCGTATTCTTTGATCTTTTCCAAATCTGAGAATT
TGTTATTGAAGGCTATAACCTCTGCCAAAGATCGCACTGGGGAAGTCACA
AGCTCCTTGAGATATGCATTTATGGCCAACTTGAACTCTGCCAGCATTGC
TGTCGTTTCGTCATTTGCTATAGAATTTAGTGAATTAATGTTGCCTATCT
CCAGATGGTCTATAACAAGTGCACCTTCCTGTCTGAGTGTGTGCAGATGG
TGATCAAAAACTTGAGCCAGTGGAGAGCCCTCGTCAAAATTGAAGAATGG
ATTCCGCACAATTCCCAATCTCTTCCCTTTGAGTCCATGAGGCCTAAGAA
ACTGTTTGTAGCCACCACGTGGAATGTATTCTGATGCTGCCCTTGTTGCA
NGATCGTAATGATCAAATCCTGCAATGGCATCTAGAACATAAGCAGCATC
CGCTACAGTTCTGCAAATAGGCCCAACGGAGTCCTGTCTAGGAGTTATTG
GGATAACGCCGGCTCTGCTGGTGAGACCAAGGGTTGGTTTGAGTCCCACT
ACT
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