CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3373 contig Csv1_Contig3373:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: YI01_SCHPO (Putative amidase C869.01 OS=Schizosaccharomyces pombe GN=SPAC869.01 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.315e-61
Identity = 127/259 (49.03%), Postives = 171/259 (66.02%), Query Frame = 1
Query:   91 SNAIHAFP--------IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +N+ + FP        + +ATI  LQ   +   LTS  +V  YL    ++NP ++G++++NPD L+ A + D ER   A G +RG LHGIP ++KDN ATKDKM+TTAGSYALLGS+VPRDA VV +LR+AGA++ G A+LSEW++ RS+    G+S RGGQ + P+ L+ +P             N+ A +LGTETDGSI+ P+  N VVGLKPT+GLTSR GVIP +  QD+ GPI RTV DA YV  ++ G D  D
Sbjct:   50 TNSTNIFPMPKCQNITLEDATIDQLQNYMENGILTSTDIVHCYLDRYLQVNPYVNGILQLNPDVLTIASELDDER---ANGIIRGPLHGIPFIVKDNFATKDKMDTTAGSYALLGSIVPRDAYVVKQLREAGAVLFGHATLSEWADMRSNDYSEGYSARGGQSRCPFNLTVNPGGSSSGSAISVASNMIAFALGTETDGSIIDPAMRNGVVGLKPTVGLTSRYGVIPESEHQDTTGPIARTVRDAVYVFQSMWGIDEND 305          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ACIBS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain SDF) GN=gatA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.026e-30
Identity = 88/243 (36.21%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +   +I++L     Q K +SR+L E YL  I +++P +   + V P+ AL +AD AD   K   AG+   L GIP+  KD   TK  + TTAGS  L   + P DA VV K + AG + LGK ++ E++   +S+     S   G   NP+ L   P             +LA  + GT+T GSI  P+S   + GLKPT G  SR G+I      D  GP+ R+  D AY+++ IAG D  D
Sbjct:    4 LHRLSIRELAKGLSQAKFSSRELTEHYLKRIAKIDPQVKSYVTVTPEQALCEADAADAALK---AGNATALTGIPLAHKDIFCTKG-IKTTAGSKMLDNFISPYDATVVEKTKAAGLVTLGKVNMDEFAMGSTSE-----SSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVIAGHDAKD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ACIBY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain AYE) GN=gatA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.952e-30
Identity = 88/243 (36.21%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +   +I++L     Q K +SR+L E YL  I +++P +   + V P+ AL +AD AD   K   AG+   L GIP+  KD   TK  + TTAGS  L   + P DA VV K + AG + LGK ++ E++   +S+     S   G   NP+ L   P             +LA  + GT+T GSI  P+S   + GLKPT G  SR G+I      D  GP+ R+  D AY+++ IAG D  D
Sbjct:    4 LHRLSIRELAEGLSQAKFSSRELTEHYLKRIAKIDPQVKSYVTVTPEQALREADAADAALK---AGNATALTGIPLAHKDIFCTKG-IKTTAGSKMLDNFISPYDATVVEKTKAAGLVTLGKVNMDEFAMGSTSE-----SSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVIAGHDAKD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ACIBC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain ACICU) GN=gatA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.952e-30
Identity = 88/243 (36.21%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +   +I++L     Q K +SR+L E YL  I +++P +   + V P+ AL +AD AD   K   AG+   L GIP+  KD   TK  + TTAGS  L   + P DA VV K + AG + LGK ++ E++   +S+     S   G   NP+ L   P             +LA  + GT+T GSI  P+S   + GLKPT G  SR G+I      D  GP+ R+  D AY+++ IAG D  D
Sbjct:    4 LHRLSIRELAEGLSQAKFSSRELTEHYLKRIAKIDPQVKSYVTVTPEQALREADAADAALK---AGNATALTGIPLAHKDIFCTKG-IKTTAGSKMLDNFISPYDATVVEKTKAAGLVTLGKVNMDEFAMGSTSE-----SSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVIAGHDAKD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ACIB5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain AB0057) GN=gatA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.952e-30
Identity = 88/243 (36.21%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +   +I++L     Q K +SR+L E YL  I +++P +   + V P+ AL +AD AD   K   AG+   L GIP+  KD   TK  + TTAGS  L   + P DA VV K + AG + LGK ++ E++   +S+     S   G   NP+ L   P             +LA  + GT+T GSI  P+S   + GLKPT G  SR G+I      D  GP+ R+  D AY+++ IAG D  D
Sbjct:    4 LHRLSIRELAEGLSQAKFSSRELTEHYLKRIAKIDPQVKSYVTVTPEQALREADAADAALK---AGNATALTGIPLAHKDIFCTKG-IKTTAGSKMLDNFISPYDATVVEKTKAAGLVTLGKVNMDEFAMGSTSE-----SSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVIAGHDAKD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ACIB3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain AB307-0294) GN=gatA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.952e-30
Identity = 88/243 (36.21%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +   +I++L     Q K +SR+L E YL  I +++P +   + V P+ AL +AD AD   K   AG+   L GIP+  KD   TK  + TTAGS  L   + P DA VV K + AG + LGK ++ E++   +S+     S   G   NP+ L   P             +LA  + GT+T GSI  P+S   + GLKPT G  SR G+I      D  GP+ R+  D AY+++ IAG D  D
Sbjct:    4 LHRLSIRELAEGLSQAKFSSRELTEHYLKRIAKIDPQVKSYVTVTPEQALREADAADAALK---AGNATALTGIPLAHKDIFCTKG-IKTTAGSKMLDNFISPYDATVVEKTKAAGLVTLGKVNMDEFAMGSTSE-----SSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVIAGHDAKD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_MICAN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.741e-30
Identity = 92/239 (38.49%), Postives = 124/239 (51.88%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +I+ L       + T+ ++   +L  I  L P +   + + PD AL+QA K D   K+    SL  L GIPI LKDN+ TK  + TT  S  L   V P ++ V  KLR  GA+I+GK +L E++   SS   SG+        NP+ LS  P                 V+LG++T GSI  P+S   VVGLKPT GL SR G++      D +GP  RTV DAA +L AIAG+D  D
Sbjct:    3 SIRQLHQQLVNKEKTAVEIATEFLARIQALEPQVKSFLHLTPDLALAQAQKVD--EKIARGESLHLLAGIPIALKDNLCTKG-IPTTCASRILENFVPPYESTVTQKLRDLGAVIVGKTNLDEFA-MGSSTENSGYHVTA----NPWDLSRVPGGSSGGSAAAVAAQECVVALGSDTGGSIRQPASFCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFGRTVEDAAILLQAIAGYDPQD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CYAP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7424) GN=gatA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.502e-29
Identity = 90/240 (37.50%), Postives = 127/240 (52.92%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A+I++L     + + ++ ++    L  I +L PLLH  + +  D AL  A K D   K+ A   +  L GIP+ +KDN+ T+  + TT GS  L   V P ++ V  KL+ +GAI LGK +L E++   SS   SG+        NP+ LS  P                 V+LG++T GSI  P+S   VVGLKPT GL SR G++      D +GP  RTV DAA +L AIAG+D  D
Sbjct:    2 ASIRELHQQLIKKERSAVEITTEALDRIEKLEPLLHSFLHITADQALESAKKVD--AKIAAKEEIGLLEGIPVGIKDNMCTQG-IPTTCGSKILENFVPPYESTVTQKLKDSGAITLGKTNLDEFA-MGSSTESSGYQVTA----NPWDLSRVPGGSSGGSAAAVASEECVVALGSDTGGSIRQPASYCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFARTVEDAAILLGAIAGYDPKD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_GEOMG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=gatA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.562e-29
Identity = 90/241 (37.34%), Postives = 124/241 (51.45%), Query Frame = 1
Query:  121 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + TI +L    K+ +L+S +     L  I  ++P ++  I V P+ AL+ A+ AD  R++ AAG +  L GIP+ LKD   TK  + TT  S  L   V P D   V KL++AGA+I+GK +  E++        SG S   G  +NP+ L   P               A  +LGT+T GSI  P+S    VGL+PT G  SR GVI      D VGP+ R V D A +L A+AG D  D
Sbjct:    5 DLTIHELHDRLKRKELSSVEATRAMLARIEAVDPKVNAYITVTPEEALAAAEAAD--RRI-AAGDMAPLTGIPVALKDIFVTKG-IRTTCASKILDNFVPPYDGTAVAKLKEAGAVIVGKLNQDEFA-----MGSSGESSAFGPTRNPWNLECIPGGSSSGSAAAIAARTATATLGTDTGGSIRQPASHCGCVGLRPTYGRVSRYGVIAYASSLDQVGPVTRDVTDCALMLQAVAGHDPMD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PROMT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL2A) GN=gatA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.346e-29
Identity = 88/242 (36.36%), Postives = 130/242 (53.72%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPAT 849
            T +DL+   K  +++S++LV+  +  I+ L+P L+  + VN + ALS+A+  D  +++ +   L  L GIPI +KDN+ TK  + TT  S  L   V P ++ V  KL  AGAI++GK ++ E++   SS   S F    G   NP+ ++  P              L   SLG++T GSI  P+S   VVG+KPT G  SR G+I      D VGP    V+DAA +L  I+G D  D  T
Sbjct:    2 TFEDLRQKLKSGEVSSKELVQEKINRINELDPTLNSFLIVNTELALSKAEHID--KQIASGDHLPPLSGIPIAIKDNLCTKG-IKTTCASKILDNFVPPYESTVTKKLLNAGAIMIGKTNMDEFA-MGSSTETSAF----GPTLNPWNITKVPGGSSGGSAASVAAGLCYGSLGSDTGGSIRQPASFCGVVGMKPTYGRVSRWGLIAFASSLDQVGPFANNVSDAAEILQVISGKDELDSTT 235          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YI01_SCHPO3.315e-6149.03Putative amidase C869.01 OS=Schizosaccharomyces po... [more]
GATA_ACIBS3.026e-3036.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBY3.952e-3036.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBC3.952e-3036.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIB53.952e-3036.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIB33.952e-3036.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_MICAN6.741e-3038.49Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CYAP71.502e-2937.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_GEOMG2.562e-2937.34Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_PROMT3.346e-2936.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
back to top