CV884882

Overview
NameCV884882
Unique NameCV884882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884882 vs. ExPASy Swiss-Prot
Match: PSF1_DICDI (Probable DNA replication complex GINS protein PSF1 OS=Dictyostelium discoideum GN=gins1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.935e-22
Identity = 66/200 (33.00%), Postives = 106/200 (53.00%), Query Frame = 3
Query:   39 MHGRLGSRLVKELASGEKGQLTHFNDELLNEVIKECSENFLAL-QSLIRKMQEEGLDFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESYMSKVDLNLNVDMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKRTDAEPYISRGLMEEL 635
            M  +    L+KEL   +   + H+ND  +   I E     +AL + LI+ + E     +      H  A+  H S+ R+KRC++AY+  R   I+   W+ G  L  LP++++E+LS  E  +F  +   L  Y SKV L+L +D  PPK+ YI+VRV+ +LGE ++ S    N   ++ HFLKR+D    +  G +E +
Sbjct:    1 MFTKTAIELIKELRGTDS--IPHYNDTSIKATIDE----MIALYEDLIKTITEHKEQKKEPFYLQH--AITFHNSINRDKRCILAYLNERLNRIKEYRWSSGQSL--LPDQLKERLSQNEIQFFSEYDKILTEYNSKVGLDLTIDPQPPKELYIEVRVIKELGEVVLNSGCTVNLNLNTTHFLKRSDITNLVKNGSLEHI 190          
BLAST of CV884882 vs. ExPASy Swiss-Prot
Match: PSF1_BOVIN (DNA replication complex GINS protein PSF1 OS=Bos taurus GN=GINS1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.354e-20
Identity = 63/196 (32.14%), Postives = 105/196 (53.57%), Query Frame = 3
Query:   63 LVKELASGEKGQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGAL-INHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESYMSKVD----LNLNVDMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKRTDAEPYISRGLMEEL 635
            LV+EL    +G+L  FN++ L +V++E       +++L  + Q +  + +++   D    +   H SL+RN+RC +AY+Y+R   I+ L W  G     LP  ++  +S  E D+F R+  +L +YM  +     L++  DM PPK  YI+VR L D GE  V    +    ++S HFL R   E  I +G++E +
Sbjct:    9 LVRELHRAAEGRLPAFNEDGLRQVLEE-------MKALYEQNQSDVNEAKSSGRGDLIPTIKFRHCSLLRNQRCTVAYLYDRLLRIRALRWEYGS---VLPSALRFHMSAEEMDWFNRYKKSLATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVEDGTSVLLKKNSQHFLPRWKCEQLIRQGILEHV 194          
BLAST of CV884882 vs. ExPASy Swiss-Prot
Match: PSF1_HUMAN (DNA replication complex GINS protein PSF1 OS=Homo sapiens GN=GINS1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.211e-19
Identity = 60/196 (30.61%), Postives = 104/196 (53.06%), Query Frame = 3
Query:   63 LVKELASGEKGQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGAL-INHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESYMSKVD----LNLNVDMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKRTDAEPYISRGLMEEL 635
            L++EL    +GQL  FN++ L +V++E       +++L  + Q +  + ++   +D    +   H SL+RN+RC +AY+Y+R   I+ L W  G     LP  ++  ++  E ++F  +  +L +YM  +     L++  DM PPK  YI+VR L D GE  V    +    ++S HFL R   E  I +G++E +
Sbjct:    9 LIRELHRAPEGQLPAFNEDGLRQVLEE-------MKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGS---VLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRWKCEQLIRQGVLEHI 194          
BLAST of CV884882 vs. ExPASy Swiss-Prot
Match: PSF1_MOUSE (DNA replication complex GINS protein PSF1 OS=Mus musculus GN=Gins1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.829e-18
Identity = 62/196 (31.63%), Postives = 100/196 (51.02%), Query Frame = 3
Query:   63 LVKELASGEKGQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGL-DFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESYMSKVD----LNLNVDMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKRTDAEPYISRGLMEEL 635
            LV+EL    +GQL  FN++ L +V++E    +   QS + + +  G  D   T           H +L+RN+RC +AY+Y+R   I+ L W  G     LP  ++  +S  E ++F  +  +L +YM  +     L++  D+ PPK  YI+VR L D GE  V    +    ++S HFL R   E  I +G++E +
Sbjct:    9 LVRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSAGRGDLIPT-------VKFRHCALLRNRRCTIAYLYDRLLRIRALRWEYGS---VLPNSLRFHMSAEETEWFNHYKKSLATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRWKCEQLIRQGVLEHV 194          
BLAST of CV884882 vs. ExPASy Swiss-Prot
Match: PSF1_CHAGB (DNA replication complex GINS protein PSF1 OS=Chaetomium globosum GN=PSF1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 67/216 (31.02%), Postives = 110/216 (50.93%), Query Frame = 3
Query:   39 MHGRLGSRLVKELASGEKGQLTH---FNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEE-------------IQEKLSHLEKDYFKRHSAALESYMSK-VDLNLNVDMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKRTDAEPYISRGLMEEL 635
            M+G LG++LV+     +   LTH   +  EL+  V +E  +    + SL+   Q  G    +T  A     L+NHLS+ RNKRCL+AY   R + ++ L W  G  + +L  +                 LS  E+DYF+++   L +Y  +  D++L   + PP+D +I VRVL D GE I     A N  ++S  ++++ D E  I++G +++L
Sbjct:    3 MYGDLGNKLVQHAKRTQN--LTHLPPYQTELVRAVTREVRDLDKDVASLLEPFQ--GSFDPSTDQATACTLLVNHLSMRRNKRCLLAYHRTRTDKLEELVWN-GSDVLDLAGQQAGGVNGAAADSGAGSSLSPQEEDYFRQYGDLLSAYKGQWTDIDLTGSLEPPRDLFIDVRVLKDAGE-IQTEYGAINLTKNSQFYVRQGDVERLIAQGYLQKL 212          
BLAST of CV884882 vs. ExPASy Swiss-Prot
Match: PSF1_NEUCR (DNA replication complex GINS protein psf-1 OS=Neurospora crassa GN=psf-1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.236e-16
Identity = 66/217 (30.41%), Postives = 107/217 (49.31%), Query Frame = 3
Query:   39 MHGRLGSRLVKELASGEK-GQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFEL-------PEEIQE---------KLSHLEKDYFKRHSAALESYMSK-VDLNLNVDMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKRTDAEPYISRGLMEEL 635
            M+G LG++LV+     +    L  +  EL+  V +E  +    + SL+   Q  G    +   A     L+NHLS+ RNKRCL+AY   R + ++ L W  G  + +L       P+ + E          LS  E+DYF++    L  Y  +  D++L   + PP+D +I VRVL D GE I     A N  ++S  ++++ D E  I +G +++L
Sbjct:    3 MYGDLGNKLVQHAKRTQNLSHLPPYQTELVRAVAREIRDLDKDVASLLEPFQ--GSFDPSAEQATACTLLVNHLSMRRNKRCLLAYHRIRTDKLEELVWN-GADILDLAGQTTGGPKGVTEGNEGGGTTSSLSPQEEDYFRQFGDLLALYKGQWTDIDLTGSLEPPRDLFIDVRVLKDAGE-IQTEYGAINLTKNSQFYVRQGDVERLIVQGYLQKL 215          
BLAST of CV884882 vs. ExPASy Swiss-Prot
Match: PSF1_YEAST (DNA replication complex GINS protein PSF1 OS=Saccharomyces cerevisiae GN=PSF1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.814e-16
Identity = 61/213 (28.64%), Postives = 108/213 (50.70%), Query Frame = 3
Query:   39 MHGRLGSRLVKELA--------SGEKGQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTV-GLRLFE---LPEEIQEKLSHLEKDYFKRHSAALESYMSK--VDLNLNVDMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKRTDAEPYISRGLMEEL 635
            M+G LG++LV E          S +   L  ++++++  ++KE S N       +++ Q+ G+         ++  L   L + RNKRCL+AY   R +++ ++AW   GL L       ++    LSH E++Y K +   +    S   VD++L+  +VPP D +I VRVL D GE I       N  + S  F++++D E  I +G ++++
Sbjct:    1 MYGDLGNKLVLEAKRTKQLYARSNQDVNLPMYHEDIIRNILKEVS-NLRKNTEYLKEQQQLGMLDDKVAKCQYFVTL---LCMERNKRCLLAYQRLRTDILDSMAWNNNGLDLMSSITFSQQDTNNLSHQEQEYLKEYCDLITDLKSGDLVDIDLSGSLVPPSDVFIDVRVLKDAGE-IQTEYGVFNLIKDSQFFVRQSDVERLIQQGYLQKI 208          
BLAST of CV884882 vs. ExPASy Swiss-Prot
Match: PSF1_EMENI (DNA replication complex GINS protein psf1 OS=Emericella nidulans GN=psf1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.227e-14
Identity = 64/227 (28.19%), Postives = 105/227 (46.26%), Query Frame = 3
Query:   39 MHGRLGSRLVKELASGEK-GQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEI-------------------------QEKLSHLEKDYFKRHSAALESYMSK-VDLNLNVDMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKRTDAEPYISRGLMEELT 638
            M+G LG++LV+     +    L  +  EL+  V +E  +    L  L+     EG    +   A     L++HL + RNKRCL+AY   R E ++ L W  G+ + E  +                           +  LS  E++YF+ +S  L +Y  +  D++L   + PPKD +I VRVL D GE I       N  ++S  +++  D E  I++G +E+L+
Sbjct:    1 MYGELGNKLVQHAKRTQSLAHLPPYQTELVRTVAREVRDLDRDLAHLLAPF--EGSFNPSQEPAVACALLVDHLCIRRNKRCLLAYHRVRTEKLEELCWK-GIDVLEHQQATAAGDDGGQMGGQNSESTGAQGTSGNESSLSPEEEEYFREYSDMLATYKGQWTDIDLTGSLEPPKDLFIDVRVLKDAGE-IQTEYGVINLTKNSQLYVRHGDVERLIAQGFLEQLS 223          
BLAST of CV884882 vs. ExPASy Swiss-Prot
Match: PSF1_SCHPO (DNA replication complex GINS protein psf1 OS=Schizosaccharomyces pombe GN=psf1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.733e-14
Identity = 63/206 (30.58%), Postives = 101/206 (49.03%), Query Frame = 3
Query:   39 MHGRLGSRLVKELASGEKGQ----LTHFNDELLNEVIKEC-SENFLALQSLIRKMQEEGLDFQTTRNADHYGALIN-HLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESYMSK-VDLNLNVDMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKRTDAEPYISRGLMEEL 635
            M   LG+R  K +   ++ Q    L  +  + +N+V+ E  + +  +L  L     E    FQ   +     AL+  H S I NKRCLMAY   R + ++   W+ G R+      +   LS  E+DY  R+S  L +Y     +L+L   +VPPK+ +I VRVL D+G+ I       N  ++S   ++ TD E  I++G + +L
Sbjct:    1 MENGLGNRSNKLIRDSKRTQYLDYLPPYQADTVNDVVNEIRAADRESLGILQNVTHEASQPFQPQDHPSEAAALLMFHSSSIYNKRCLMAYHNLRLQRLRQYCWSGGKRMESC---LDTSLSTYERDYLTRYSELLAAYKGAWSELDLTGSLVPPKNLFIDVRVLKDVGD-IETEYGTINLTKNSQLHVRATDVERLIAQGFLAKL 202          
BLAST of CV884882 vs. ExPASy Swiss-Prot
Match: PSF1_KLULA (DNA replication complex GINS protein PSF1 OS=Kluyveromyces lactis GN=PSF1 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.953e-14
Identity = 62/217 (28.57%), Postives = 105/217 (48.39%), Query Frame = 3
Query:   39 MHGRLGSRLVKEL--------ASGEKGQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLF--------ELPEEIQEKLSHLEKDYFKRHSAALESYMS--KVDLNLNVDMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKRTDAEPYISRGLMEEL 635
            M+G L ++L+ E         A   K QL  + DEL+  ++KE      +L+  +  ++E+ L  Q  + A     ++  LS+ RNKRCL+AY   R+EM+ ++ W      F         L       LSH E++Y K ++  L    S    +++L   + PP D +I VRVL D G+ I       N  + S  F++++D E  I +G ++++
Sbjct:    1 MYGDLANKLILEAKRTQQLSQAGFNKQQLPVYQDELVRGILKEVG----SLKKNVDYLREQQLTDQDNKVAQCQ-YVVAMLSMERNKRCLLAYQKMRSEMLDSMVWDNNGMEFSSAISNHPNLSSFDSSVLSHAEQEYLKEYAQLLTELKSGELSEIDLTGMLQPPSDVFIDVRVLKDAGQ-IETEYGVFNLIKDSQFFVRQSDVERLIQQGYLQKI 211          
The following BLAST results are available for this feature:
BLAST of CV884882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PSF1_DICDI7.935e-2233.00Probable DNA replication complex GINS protein PSF1... [more]
PSF1_BOVIN4.354e-2032.14DNA replication complex GINS protein PSF1 OS=Bos t... [more]
PSF1_HUMAN8.211e-1930.61DNA replication complex GINS protein PSF1 OS=Homo ... [more]
PSF1_MOUSE1.829e-1831.63DNA replication complex GINS protein PSF1 OS=Mus m... [more]
PSF1_CHAGB9.078e-1831.02DNA replication complex GINS protein PSF1 OS=Chaet... [more]
PSF1_NEUCR2.236e-1630.41DNA replication complex GINS protein psf-1 OS=Neur... [more]
PSF1_YEAST3.814e-1628.64DNA replication complex GINS protein PSF1 OS=Sacch... [more]
PSF1_EMENI1.227e-1428.19DNA replication complex GINS protein psf1 OS=Emeri... [more]
PSF1_SCHPO2.733e-1430.58DNA replication complex GINS protein psf1 OS=Schiz... [more]
PSF1_KLULA7.953e-1428.57DNA replication complex GINS protein PSF1 OS=Kluyv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884882 ID=CV884882; Name=CV884882; organism=Citrus sinensis; type=EST; length=809bp
AAACAAACAGCCATAACGGGATCTCGAAAGGAAAAGAAATGCACGGAAGA
TTGGGAAGCCGACTGGTAAAGGAACTTGCAAGTGGTGAAAAAGGCCAGCT
CACGCATTTTAATGATGAGCTTTTAAATGAAGTAATTAAAGAATGCAGTG
AAAATTTCCTCGCGCTTCAGTCCTTGATAAGGAAAATGCAGGAAGAAGGA
TTGGATTTTCAAACAACAAGAAATGCAGATCACTATGGAGCACTTATCAA
CCACCTTTCTCTAATTCGCAACAAACGCTGCCTGATGGCATACGTGTACA
ACCGAGCAGAAATGATACAGAATTTGGCATGGACAGTTGGGCTTAGGCTC
TTTGAGCTGCCCGAAGAAATTCAAGAAAAACTCAGTCACTTGGAAAAAGA
TTATTTTAAGAGACATTCTGCAGCATTGGAATCATACATGTCGAAAGTGG
ATCTTAACTTGAATGTGGATATGGTGCCACCAAAAGACCCCTATATCAAG
GTGAGGGTCCTTGATGATCTCGGTGAAGGAATAGTTGTGAGTGACAAGGC
AGCCAATTTTGCCCGCCACTCGATGCACTTTCTCAAACGAACTGATGCGG
AGCCATACATCTCAAGAGGCTTGATGGAGGAACTTACAGGCTGACCTAAA
CTTGGCCCTCTGCAATTGCATATGTTTGTTGAAGTTTTTTGTGGATCTGA
CTTTGTTGCTTATCCACTGTATGTAAATTATTAGTTCTATTTAATTGCAG
ATGAGACTTAAGAATGAGGAAGTTGGTCGACTTCCTCATCTACATCGGAA
AAATAATGA
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