CV884877

Overview
NameCV884877
Unique NameCV884877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSF3_BOVIN (Acyl-CoA synthetase family member 3, mitochondrial OS=Bos taurus GN=ACSF3 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.499e-54
Identity = 112/243 (46.09%), Postives = 154/243 (63.37%), Query Frame = -2
Query:  263 MQQWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV---------------------GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQL 928
            +++W+ ITGH  LERYGMTE  MA+SNPL  AR  G+VG PLPGV+V+I  +    D++                       GE+ V+ PS+F+EYW  P+ TK +FT+DG+FKTGDT    +DG Y I GRTS DI+K GGYK+SALE+E +LL HP++ +  V+G+PD  +G  V+A++ L+E            LS +EL  WA+  LAPY +P+ L L + +PRN MGKVNK++L  QL
Sbjct:  341 LEKWKGITGHTLLERYGMTEIGMALSNPLTAARLPGSVGTPLPGVEVRIVSENPQKDSSPYLIHAEGSEENTKVTPGFEEKEGELLVRGPSVFREYWDKPEETKAAFTSDGWFKTGDT-VVFKDGCYWIRGRTSVDIIKSGGYKVSALEVERLLLAHPSITDVAVIGVPDMTWGQRVTAVVTLQEGHS---------LSHRELKEWARGVLAPYAVPSELLLVEEIPRNQMGKVNKRDLVRQL 573          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSF3_MOUSE (Acyl-CoA synthetase family member 3, mitochondrial OS=Mus musculus GN=Acsf3 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.403e-52
Identity = 110/242 (45.45%), Postives = 149/242 (61.57%), Query Frame = -2
Query:  263 MQQWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV--------------------GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQL 928
            +++W + TGH  LERYGMTE  MA+SNPL  AR  G+VG PLPGV+V+I  +     +  +                    GE+ V+ PS+F+EYW  P+ TK +FT+DG+F+TGDT    +D  Y I GRTS DI+K GGYK+SALEIE  LL HP++ +  V+G+PD  +G  V+A++ L+E            LS  +L  WA+  LAPY +P+ L L + +PRN MGKVNKKEL  QL
Sbjct:  340 LEKWRSATGHTLLERYGMTEIGMALSNPLTEARVPGSVGTPLPGVEVRIISENPQKGSPYIIHAEGNERGTKVTPGFEEKEGELLVRGPSVFREYWDKPEETKSAFTSDGWFRTGDTAVF-KDARYWIRGRTSVDIIKTGGYKVSALEIERHLLAHPSITDVAVIGVPDMTWGQRVTAVVALQEGHS---------LSHGDLKEWARGVLAPYAVPSELLLVEEIPRNQMGKVNKKELLKQL 571          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSF3_HUMAN (Acyl-CoA synthetase family member 3, mitochondrial OS=Homo sapiens GN=ACSF3 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 7.700e-51
Identity = 109/240 (45.42%), Postives = 147/240 (61.25%), Query Frame = -2
Query:  275 MQQWETITGHRFLERYGMTEFVMAISNPLRGA-RKAGTVGNPLPGVQVKIAEDESGSDAAGV---------------------GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 928
            +++W+ ITGH  LERYGMTE  MA+S PL  A R  G+VG PLPGVQV+I  +    +A                        GE+ V+ PS+F+EYW  P+ TK +FT DG+FKTGDT    +DG Y I GRTS DI+K GGYK+SALE+E  LL HP++ +  V+G+PD  +G  V+A++ L E            LS +EL  WA++ LAPY +P+ L L + +PRN MGK++KK L
Sbjct:  340 LEKWKNITGHTLLERYGMTEIGMALSGPLTTAVRLPGSVGTPLPGVQVRIVSENPQREACSYTIHAEGDERGTKVTPGFEEKEGELLVRGPSVFREYWNKPEETKSAFTLDGWFKTGDT-VVFKDGQYWIRGRTSVDIIKTGGYKVSALEVEWHLLAHPSITDVAVIGVPDMTWGQRVTAVVTLREGHS---------LSHRELKEWARNVLAPYAVPSELVLVEEIPRNQMGKIDKKAL 569          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: ACSF3_XENLA (Acyl-CoA synthetase family member 3, mitochondrial OS=Xenopus laevis GN=acsf3 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.006e-50
Identity = 108/239 (45.19%), Postives = 146/239 (61.09%), Query Frame = -2
Query:  275 MQQWETITGHRFLERYGMTEFVMAISNPLRGARKAGTVGNPLPGVQVKIAEDE-----------SGSDAAGV----------GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 928
            +++W+ ITGH  LERYGMTE  MA++NPL G R  G VG PLPGV+V+                +  D+ G           GE+ V+ P++FKEYW     T+++FT+DG+FKTGDT    +DG Y ILGRTS DI+K GGYK+SALE+E  LL HP++ +  V+G PD  +G  V+AI+ L         +    LSLQEL  WA+  +APY +P  L   + +PRN MGK+NKK+L
Sbjct:  343 LERWQEITGHTLLERYGMTEIGMALTNPLHGPRVPGAVGAPLPGVEVRTVTQNPRKEGTSYTTHAQGDSTGTMVSVGLENREGELQVRGPAVFKEYWNKRLDTQEAFTSDGWFKTGDTAMY-KDGTYWILGRTSVDIIKSGGYKVSALEVERHLLGHPSITDVAVIGAPDVTWGQRVAAIVKL---------RDGHALSLQELKEWARAVMAPYCIPAELIRVEEIPRNQMGKINKKQL 571          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: LCFA_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 8.006e-32
Identity = 82/220 (37.27%), Postives = 121/220 (55.00%), Query Frame = -2
Query:  275 QQWETITGHRFLERYGMTEFV-MAISNPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV--GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 925
            Q++E +TG + +E YG++E   +  +N + G  K G++G P P     I  +E+G  AA    GEI VK P + K YW  P+ T  +   DG+  TGD G  DE+G++ I  R   DI+  GGY +   E+E  L EH A+ E  V G+PD   G+ V A +VL++ AK D E         EL  +A+ +LAPYK+P        LP+ A+GK+ ++ L
Sbjct:  341 QKFEKVTGGKLVEGYGLSEASPVTHANFIWGKNKPGSIGCPWPSTDAAIYSEETGELAAPYEHGEIIVKGPQVMKGYWNKPEETA-AVLRDGWLFTGDMGYMDEEGFFYIADRKK-DIIIAGGYNIYPREVEEALYEHEAIQEIVVAGVPDSYRGETVKAFVVLKKGAKADTE---------ELDAFARSRLAPYKVPKAYEFRKELPKTAVGKILRRRL 549          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: LCFA_SALTY (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.278e-29
Identity = 73/222 (32.88%), Postives = 119/222 (53.60%), Query Frame = -2
Query:  266 QQWETITGHRFLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 925
            ++W  +TG   LE YG+TE    +S NP      +G++G P+P  + K+ +D+    A G  GE+CVK P +   YW+ P  T D    DG+  TGD    DEDG+  I+ R   D++ V G+ +   EIE V+++H  V E   +G+P    G+AV   +V          K  P L+   L T+ +  L  YK+P ++   + LP++ +GK+ ++EL+++
Sbjct:  343 ERWVKLTGQYLLEGYGLTECAPLVSVNPHDIDYHSGSIGLPVPSTEAKLVDDDDNEVAPGEAGELCVKGPQVMLGYWQRPDAT-DEIIKDGWLHTGDIAVMDEDGFLRIVDRKK-DMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVV----------KKDPALTDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELRDE 552          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: LCFA_SALTI (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.278e-29
Identity = 73/222 (32.88%), Postives = 119/222 (53.60%), Query Frame = -2
Query:  266 QQWETITGHRFLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAG-VGEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 925
            ++W  +TG   LE YG+TE    +S NP      +G++G P+P  + K+ +D+    A G  GE+CVK P +   YW+ P  T D    DG+  TGD    DEDG+  I+ R   D++ V G+ +   EIE V+++H  V E   +G+P    G+AV   +V          K  P L+   L T+ +  L  YK+P ++   + LP++ +GK+ ++EL+++
Sbjct:  343 ERWVKLTGQYLLEGYGLTECAPLVSVNPHDIDYHSGSIGLPVPSTEAKLVDDDDNEVAPGEAGELCVKGPQVMLGYWQRPDAT-DEIIKDGWLHTGDIAVMDEDGFLRIVDRKK-DMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVV----------KKDPALTDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELRDE 552          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: LCFA_ECOLI (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.669e-29
Identity = 72/222 (32.43%), Postives = 120/222 (54.05%), Query Frame = -2
Query:  266 QQWETITGHRFLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 925
            ++W  +TG   LE YG+TE    +S NP      +G++G P+P  + K+ +D+      G  GE+CVK P +   YW+ P  T D    +G+  TGD    DE+G+  I+ R   D++ V G+ +   EIE V+++HP V E   +G+P    G+AV   +V          K  P L+ + L T+ + +L  YK+P  +   D LP++ +GK+ ++EL+++
Sbjct:  343 ERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDAT-DEIIKNGWLHTGDIAVMDEEGFLRIVDRKK-DMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVV----------KKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDE 552          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: LCFA_ECOL6 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6 GN=fadD PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.669e-29
Identity = 72/222 (32.43%), Postives = 120/222 (54.05%), Query Frame = -2
Query:  266 QQWETITGHRFLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 925
            ++W  +TG   LE YG+TE    +S NP      +G++G P+P  + K+ +D+      G  GE+CVK P +   YW+ P  T D    +G+  TGD    DE+G+  I+ R   D++ V G+ +   EIE V+++HP V E   +G+P    G+AV   +V          K  P L+ + L T+ + +L  YK+P  +   D LP++ +GK+ ++EL+++
Sbjct:  343 ERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDAT-DEIIKNGWLHTGDIAVMDEEGFLRIVDRKK-DMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVV----------KKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDE 552          
BLAST of CV884877 vs. ExPASy Swiss-Prot
Match: LCFA_ECO57 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.180e-29
Identity = 71/222 (31.98%), Postives = 121/222 (54.50%), Query Frame = -2
Query:  266 QQWETITGHRFLERYGMTEFVMAIS-NPLRGARKAGTVGNPLPGVQVKIAEDESGSDAAGV-GEICVKSPSLFKEYWKLPKVTKDSFTADGFFKTGDTGKQDEDGYYIILGRTSADIMKVGGYKLSALEIESVLLEHPAVAECCVLGLPDKDYGDAVSAIIVLEEEAKRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 925
            ++W  +TG   LE YG+TE    +S NP      +G++G P+P  + K+ +D+    + G  GE+CV+ P +   YW+ P  T D    +G+  TGD    DE+G+  I+ R   D++ V G+ +   EIE V+++HP V E   +G+P    G+AV   +V          K  P L+ + L T+ + +L  YK+P  +   D LP++ +GK+ ++EL+++
Sbjct:  343 ERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVSPGQPGELCVRGPQVMLGYWQRPDAT-DEIIKNGWLHTGDIAVMDEEGFLRIVDRKK-DMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVV----------KKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDE 552          
The following BLAST results are available for this feature:
BLAST of CV884877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 418
Match NameE-valueIdentityDescription
ACSF3_BOVIN1.499e-5446.09Acyl-CoA synthetase family member 3, mitochondrial... [more]
ACSF3_MOUSE1.403e-5245.45Acyl-CoA synthetase family member 3, mitochondrial... [more]
ACSF3_HUMAN7.700e-5145.42Acyl-CoA synthetase family member 3, mitochondrial... [more]
ACSF3_XENLA1.006e-5045.19Acyl-CoA synthetase family member 3, mitochondrial... [more]
LCFA_BACSU8.006e-3237.27Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
LCFA_SALTY1.278e-2932.88Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
LCFA_SALTI1.278e-2932.88Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
LCFA_ECOLI1.669e-2932.43Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECOL61.669e-2932.43Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECO572.180e-2931.98Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884877 ID=CV884877; Name=CV884877; organism=Citrus sinensis; type=EST; length=929bp
CAAATAATTCGTAAATCTATATGAAGATATTGGTTCTACAAGCATATTTG
AAGTATTTTTCGTAAGTAAAATATAGATGGTTGACATAACTCAGCTGTAA
CTCTTTCTAGCCTTTATAATGTATACAAGACTATTACAAGCTTCTCACTT
GGGATCTTTCGACCGAAAGGAAAAGAATGAAAAATAAATGTTTCTTCTAG
TTCATTCTTGCATTCCTCACTTATAATTAATGTACAACTAAGTTGAATTA
TTGTTGTGCAGCCAGTTGGTTCTTCAACTCTTTCTTGTTCACCTTTCCCA
TGGCATTTCGAGGCAGAGAGTCCCACAAGAACAGACGGGTTGGCAGCTTG
TACGGCGCAAGCTTGTCTTTAGCCCAGGTGCAAAGTTCTTGCAAGCTTAA
TACAGGCTTTGACTTCTCTTGATCTCTCTTTGCTTCTTCTTCAAGCACAA
TTATGGCACTTACAGCATCTCCATAGTCTTTGTCTGGCAAGCCCAATACA
CAACACTCCGCTACAGCTGGATGCTCCAAAAGAACTGATTCAATTTCCAA
TGCAGATAATTTGTATCCACCAACCTTCATAATATCAGCACTCGTACGGC
CCAAAATGATGTAGTATCCATCTTCATCCTGTTTCCCTGTGTCCCCAGTC
TTGAAGAATCCATCAGCAGTAAATGAGTCCTTTGTTACCTTGGGAAGTTT
CCAGTATTCCTTAAACAAAGAAGGGCTTTTAACGCAAATCTCTCCTACTC
CTGCTGCATCACTACCACTTTCATCTTCAGCAATCTTGACCTGAACACCA
GGAAGTGGATTGCCAACAGTGCCTGCCTTTCGTGCACCCCTTAAGGGATT
TGATATTGCCATGACAAATTCTGTCATGCCATATCGTTCCAAAAAGCGAT
GCCCTGTGATAGTTTCCCATTGTTGCATG
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