CV884876

Overview
NameCV884876
Unique NameCV884876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884876_ssr621 microsatellite CV884876_ssr621:621..630. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: ACSF3_HUMAN (Acyl-CoA synthetase family member 3, mitochondrial OS=Homo sapiens GN=ACSF3 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.690e-26
Identity = 66/165 (40.00%), Postives = 94/165 (56.97%), Query Frame = 3
Query:  261 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            R+  +      +V     +W SG +AVPL   +P ++L +V+ DS  S+VL++++Y E+L  V  K G    L+P  P + +              G R +  A+I+YTSGTTG+PKGV+ TH++I A V  L   W +T  D  LH LPLHHVHG+ NALL PL
Sbjct:   97 RVSFLCANDASYVVAQWASWMSGGVAVPLYRKHPAAQLEYVICDSQSSVVLASQEYLELLSPVVRKLGVP--LLPLTPAIYTGAVEEPAEVPVPEQGWRNKG-AMIIYTSGTTGRPKGVLSTHQNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNALLCPL 258          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: ACSF3_XENLA (Acyl-CoA synthetase family member 3, mitochondrial OS=Xenopus laevis GN=acsf3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.765e-26
Identity = 61/165 (36.97%), Postives = 93/165 (56.36%), Query Frame = 3
Query:  261 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            R+  +   +  +V      W SG IAVPL  S+P SEL +V+ DS  ++V++ E Y  VL  +A + G     +    N+   + +  + +  ++D    +  A+I+YTSGTTG+PKGV+ TH ++ + V  L   W +T  D  LH LPLHHVHG+ N L+ PL
Sbjct:   98 RVSFLCPNNSSYVVCQWAVWMSGAIAVPLCKSHPPSELKYVLQDSQSALVVAEESYTNVLSPLAEQLGIPVLTMSGSQNLHP-SELLQEIKISQLDLDWKDRGAMIIYTSGTTGRPKGVLSTHYNLYSMVTALVNEWGWTKEDSILHVLPLHHVHGVVNKLMCPL 261          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: ACSF3_BOVIN (Acyl-CoA synthetase family member 3, mitochondrial OS=Bos taurus GN=ACSF3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.868e-25
Identity = 63/165 (38.18%), Postives = 90/165 (54.55%), Query Frame = 3
Query:  261 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            R+ ++      FV      W SG +AVPL   +P ++L + + DS  S+VL+  ++ E+L  VA K G     + P+P         D  +   ++    +  A+I+YTSGTTG+PKGV+ TH +I A V  L   W +T  D  LH LPLHHVHG+ N LL PL
Sbjct:   98 RVSLLCSNDVSFVVAQWAAWMSGGVAVPLYRKHPRAQLEYFIQDSRSSVVLAGPEHVELLSPVAQKLGVP---LLPLPPTVYHGVAEDPEEGLVLERNWRDRGAMIIYTSGTTGRPKGVLSTHDNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNKLLCPL 259          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: ACSF3_MOUSE (Acyl-CoA synthetase family member 3, mitochondrial OS=Mus musculus GN=Acsf3 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.440e-25
Identity = 64/165 (38.79%), Postives = 91/165 (55.15%), Query Frame = 3
Query:  261 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            R+  +      +V     +W SG +AVPL   +PE++L + + DS  S+V+  ++Y E L  +A + G    L+P  P V    T     Q  +  G R    A+I YTSGTTG+PKG + TH+++ A V  L  +W +T  D  LH LPLHHVHG+ N LL PL
Sbjct:   97 RVSFLCSNDVSYVVAQWASWMSGGVAVPLYWKHPEAQLEYFIQDSRSSLVVVGQEYLERLSPLAQRLGVP--LLPLTPAVYHGATEKPTEQPVEESGWRDRG-AMIFYTSGTTGRPKGALSTHRNLAAVVTGLVHSWAWTKNDVILHVLPLHHVHGVVNKLLCPL 258          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: PKSN_BACSU (Polyketide synthase pksN OS=Bacillus subtilis GN=pksN PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 56/214 (26.17%), Postives = 99/214 (46.26%), Query Frame = 3
Query:   57 EVFKAAYKKGSMARDSVAIRADQKSYSYDQXXXXXXXXXXXXXXNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFL 698
            EVF+   +K     D+VA+  + +S +Y +               D K+TS     ++  V        +GI A+ SF+ + G+LG   +G   VPL  S+P+  L +++ DS  S+VL+  +  + +  +        ++      ++      DQ  +      + E  A I+YTSG+TG+PKGV+  H+SI   +  L   +  T+ D +L
Sbjct:  470 EVFE---EKAKQTPDAVAVMFEDRSLTYKEV--------------DEKSTSVAVYLQHQGVRPE---QPVGICAERSFDMIIGILGILKAGGAYVPLDPSFPQERLKYMLKDSQASIVLTQPNVHDRISGLTGSHVKAINI-----ELACRNGYTDQQSSGLKREVKPEHLAYIIYTSGSTGEPKGVMVEHRSIMNTLNFLESHYPVTAEDAYL 658          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_KLEP3 (Bifunctional protein aas OS=Klebsiella pneumoniae (strain 342) GN=aas PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.002e-12
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKS+ A V+ +    ++T+ D+F+ +LPL H  GL   LL PL
Sbjct:  362 QQPEDAAMILFTSGSEGNPKGVVHSHKSLLANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLLTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ERWT9 (Bifunctional protein aas OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=aas PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  543 MDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            M  Q+ ED A++++TSG+ G PKGVVH+HKS+ A V+ +    ++T  D+F+ +LPL H  GL   L  PL
Sbjct:  359 MVAQQPEDAAMVLFTSGSEGHPKGVVHSHKSLLANVEQIRTVADFTPCDRFMSALPLFHAFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_CITK8 (Bifunctional protein aas OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=aas PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            QR E+ A+I++TSG+ G PKGVVH+HKS+ A V+ +    ++T+ D+F+ +LPL H  GL   LL PL
Sbjct:  362 QRPEEAAMILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLLTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ENTS8 (Bifunctional protein aas OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=aas PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED ALI++TSG+ G PKGVVH+HKS+ A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAALILFTSGSEGNPKGVVHSHKSLLANVEQIRTIADFTADDKFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ENT38 (Bifunctional protein aas OS=Enterobacter sp. (strain 638) GN=aas PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAAMILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTAKDRFMSALPLFHSFGLTVGLFTPL 429          
The following BLAST results are available for this feature:
BLAST of CV884876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
ACSF3_HUMAN1.690e-2640.00Acyl-CoA synthetase family member 3, mitochondrial... [more]
ACSF3_XENLA3.765e-2636.97Acyl-CoA synthetase family member 3, mitochondrial... [more]
ACSF3_BOVIN1.868e-2538.18Acyl-CoA synthetase family member 3, mitochondrial... [more]
ACSF3_MOUSE2.440e-2538.79Acyl-CoA synthetase family member 3, mitochondrial... [more]
PKSN_BACSU1.814e-1226.17Polyketide synthase pksN OS=Bacillus subtilis GN=p... [more]
AAS_KLEP39.002e-1248.53Bifunctional protein aas OS=Klebsiella pneumoniae ... [more]
AAS_ERWT91.176e-1145.07Bifunctional protein aas OS=Erwinia tasmaniensis (... [more]
AAS_CITK81.176e-1148.53Bifunctional protein aas OS=Citrobacter koseri (st... [more]
AAS_ENTS81.536e-1148.53Bifunctional protein aas OS=Enterobacter sakazakii... [more]
AAS_ENT381.536e-1148.53Bifunctional protein aas OS=Enterobacter sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884876 ID=CV884876; Name=CV884876; organism=Citrus sinensis; type=EST; length=771bp
GGTTTCGGCTACCACAAGCTCGCTTTCGCTCCTCTTTTCATTCTAATTCA
TTTATGGAGGTCTTCAAAGCTGCATACAAAAAGGGTTCTATGGCTCGTGA
CAGTGTTGCAATTAGAGCAGATCAAAAGAGTTACAGTTATGATCAACTTG
CGTCATCTGCATTAAGAATATCTAGTCTCTTGTGCAGTAATGACCTTAAA
ACTACTAGTGAAAAGACCAAAAATGAGAATTCAGCTGTGCTAGCTGGAGG
ATGTGGAGCACGAATAGGAATTGTGGCGAAGCCTTCATTTGAGTTTGTTG
CAGGAGTACTTGGGACTTGGTTCAGCGGATGTATTGCAGTTCCACTTGCA
CTCAGCTACCCTGAGTCTGAGCTCCTGCATGTGATGCATGATTCAGATAT
ATCCATGGTTCTAAGCACTGAAGATTATCGTGAGGTCTTGCAAAACGTTG
CTTCTAAGAGTGGTGCTAAATTTTCCCTAATTCCCCCTGTTCCCAACGTA
TCTTCAGAGACAACAGTGTTTGATCAGTCCCAGGCTGAAAAAATGGACGG
ACAACGAGGTGAGGATCCAGCGTTAATAGTGTACACGAGTGGGACAACTG
GGAAGCCTAAAGGAGTTGTCCACACACACAAAAGCATTGATGCACAGGTT
CAAATGTTAACTGAGGCTTGGGAATATACATCAGCTGATCAATTTTTGCA
TTCTTTACCACTACATCATGTCCATGGACTTTTCAATGCCTTACTTGCCC
CGCTATAATGCTGGTGCCACA
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