CV884868

Overview
NameCV884868
Unique NameCV884868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884868_ssr233 microsatellite CV884868_ssr233:233..242. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884868 vs. ExPASy Swiss-Prot
Match: OEP80_ARATH (Outer envelope protein of 80 kDa OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.215e-34
Identity = 104/241 (43.15%), Postives = 130/241 (53.94%), Query Frame = 3
Query:  132 NDDARFTSSPLKIXXXXXXXXXXXXAET----------LTESKNSLSHQIHSLRTRSDESTQSTELTQPESLTRKLQLFAERAYGNSARVCSMYPSTTGAG---------ETLVNL--PLLCSAWMSLSQSTTSESAALPEVSSTXXXXXXXXXPHSVSRSDEERVLISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGYFCSCMPIA--TRDGIRLIFQL 785
            NDD RF+SS ++I                         L+ ++NSL+  + SL+ R     +S    +P   T+ L    +   G S+ +      +T            ET+  L  PLLC A  SLS +  +ES    E   T          HSVSR+ EERVLISEVLVR KDGEELERK L  EAL  LKAC ANSALT+REVQEDV+RII+ GYFCSC P+A  TRDGIRL+FQ+
Sbjct:    5 NDDVRFSSSSIRIHSPSPKEQHSLLTNLQSCSKTFVSHLSNTRNSLNQMLQSLKNRHTPPPRSVR--RPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQFNWSESRDENVETIRGLSSPLLCCA--SLSLTRPNESTQSVEGKDTVQQQKG----HSVSRNAEERVLISEVLVRTKDGEELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCSCTPVAVDTRDGIRLMFQV 237          
BLAST of CV884868 vs. ExPASy Swiss-Prot
Match: OEP80_ORYSJ (Outer envelope protein of 80 kDa OS=Oryza sativa subsp. japonica GN=OEP80 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.703e-20
Identity = 51/79 (64.56%), Postives = 61/79 (77.22%), Query Frame = 3
Query:  555 EERVLISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGYFCSCMPIA--TRDGIRLIFQL 785
            EERVLISEV VR KDGE LER  L   A   L+AC  N+ALTVREVQEDV+R+++ G F SCMP+A  TRDGIRL+F++
Sbjct:   91 EERVLISEVAVRGKDGEPLERPELEAAAAAALRACRPNAALTVREVQEDVHRVVESGLFRSCMPVAVDTRDGIRLVFEV 169          
BLAST of CV884868 vs. ExPASy Swiss-Prot
Match: OEP80_ORYSI (Outer envelope protein of 80 kDa OS=Oryza sativa subsp. indica GN=OEP80 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.703e-20
Identity = 51/79 (64.56%), Postives = 61/79 (77.22%), Query Frame = 3
Query:  555 EERVLISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGYFCSCMPIA--TRDGIRLIFQL 785
            EERVLISEV VR KDGE LER  L   A   L+AC  N+ALTVREVQEDV+R+++ G F SCMP+A  TRDGIRL+F++
Sbjct:   91 EERVLISEVAVRGKDGEPLERPELEAAAAAALRACRPNAALTVREVQEDVHRVVESGLFRSCMPVAVDTRDGIRLVFEV 169          
The following BLAST results are available for this feature:
BLAST of CV884868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
OEP80_ARATH1.215e-3443.15Outer envelope protein of 80 kDa OS=Arabidopsis th... [more]
OEP80_ORYSJ1.703e-2064.56Outer envelope protein of 80 kDa OS=Oryza sativa s... [more]
OEP80_ORYSI1.703e-2064.56Outer envelope protein of 80 kDa OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884868 ID=CV884868; Name=CV884868; organism=Citrus sinensis; type=EST; length=880bp
GTTGCTTCTTCTTCTCCAATGCGTTCCACTAAATTCAGCTTCAGTTCATC
ATTCAATTAACCGAAATTTCAATCCTTTTTTGCTTTTAATTTTGCAACAG
AGGCAGCCCGATTCTGACAATGGCTCAGAAAAACGACGACGCTCGGTTCA
CATCATCTCCTCTCAAAATCCCTCGCTTTCAACCTCAGCCTCCTCTCCCT
TTCTTCGCCGAAACATTAACGGAATCCAAAAACTCTCTCTCTCATCAAAT
TCACTCACTCAGAACTCGCTCTGATGAGTCCACTCAGTCAACTGAGTTAA
CTCAGCCGGAGTCACTCACTCGGAAGCTCCAATTATTTGCTGAACGCGCG
TACGGAAACTCGGCTCGCGTCTGTTCAATGTACCCGTCAACAACTGGCGC
CGGCGAGACGTTAGTGAATTTACCACTTCTATGCTCGGCGTGGATGTCCC
TGAGTCAGTCGACGACGTCCGAGTCGGCAGCTTTGCCCGAGGTGTCGTCG
ACTCAGCTGCAACAGAAAGCGCAGCAGCAGCCGCACTCGGTGAGCCGAAG
CGACGAAGAGCGGGTGTTGATAAGTGAAGTTTTGGTGAGAAATAAAGACG
GTGAAGAACTTGAGAGAAAATACCTCGGAACAGAGGCGTTAACTGTGTTA
AAAGCTTGCCATGCCAACTCAGCATTGACTGTTCGCGAGGTCCAAGAGGA
CGTTAACAGGATCATCGATGGCGGTTACTTCTGCTCGTGTATGCCCATCG
CAACGCGTGATGGCATCAGATTGATATTTCAGCTATATTTAAAATAATCT
TTTAAGAAAAAATTAATTAACTTTTCTGTAAAATTATGCCTTAGACATTA
TGTTGTATTTAATTTCTTTGATGATTACTT
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