CV884862

Overview
NameCV884862
Unique NameCV884862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884862 vs. ExPASy Swiss-Prot
Match: XYP11_ARATH (Xylogen-like protein 11 OS=Arabidopsis thaliana GN=XYP11 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.594e-22
Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = -3
Query:  345 LIMVSCIGSSSGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLL--GKNNKYGIKIDMTRALKLPSVCGVSTPPVNLCSLAGVP 695
            L +  C G S     AP P  A GPS SP + CL  +LN+SDC SYV  GSN   P+  CCPELAG+V+S+P C+C L   G + ++G+K+D  RA +L ++CGV  P  +LCS+ G P
Sbjct:   13 LFLSLCSGQSPP---APEPIAADGPS-SPVN-CLVSMLNVSDCFSYVQVGSNEIKPEAACCPELAGMVQSSPECVCNLYGGGASPRFGVKLDKQRAEQLSTICGVKAPSPSLCSVLGFP 126          
BLAST of CV884862 vs. ExPASy Swiss-Prot
Match: NLTL2_ARATH (Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.027e-15
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = -3
Query:  354 DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNKYGIKIDMTRALKLPSVCGVSTPPVNLCSLA 602
            DC + +LNM+DCLS+VT GS V  P+  CC  L  +V + P CLC+    +   G+ +D+++A  LPSVC V+ PP   C L+
Sbjct:   26 DCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTLDLSKAASLPSVCKVAAPPSARCGLS 108          
BLAST of CV884862 vs. ExPASy Swiss-Prot
Match: NLTL5_ARATH (Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.904e-15
Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = -3
Query:  345 LIMVSCIGSSSGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNKYGIKIDMTRALKLPSVCGVSTPPVNLCSLAGVP 695
            L  VS +G+S   A AP PS+          DC T +LNM+DCLS+V+ G  V  P+  CC  L  +++++  CLC+    +   G+ +++T+A  LP+ C +  P +  C L+  P
Sbjct:   21 LSSVSVLGASHHHATAPAPSV----------DCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIATCGLSVAP 127          
The following BLAST results are available for this feature:
BLAST of CV884862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
XYP11_ARATH9.594e-2247.06Xylogen-like protein 11 OS=Arabidopsis thaliana GN... [more]
NLTL2_ARATH1.027e-1543.37Non-specific lipid-transfer protein-like protein A... [more]
NLTL5_ARATH3.904e-1534.19Non-specific lipid-transfer protein-like protein A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884862 ID=CV884862; Name=CV884862; organism=Citrus sinensis; type=EST; length=913bp
TCAATGATTCTACAGGAAGATGGGTGAATGTAGCGAAGAGAGAATATAAT
TGGTGTCACAACTCACAAGCTAGACACAAATTATCTGGGTACAAATACAA
TAAAACATAAAATACCATACCAAAAATTTAAAAAAGGAAAAAAAAATTCA
AGTATGAAATTAAAACAATAAAATAAGAATTAAATCAGAAATGCAACTGC
TAAGCCAACAAGGAGGCACAGAACGGAGCCGGCGTTGCCTGATGCTGCAT
TGTCATTATTTCCATTTGAAGGGCTGGCAGCTAAACCGGACGGCGGTTGA
GTACCTGGTGACGCGGGCCCTGGGCTTCCTGTTGGAGCTTCAATCGGAAC
TCCAGCCAAGGAGCAAAGATTAACCGGAGGGGTGCTGACGCCACAAACAG
AAGGAAGCTTGAGAGCTCGAGTCATATCAATCTTGATTCCATACTTATTG
TTCTTCCCGAGAAGCTGGCACAAACAAATGGGGTTGCTCTCAACCAAACC
GGCCAGCTCCGGGCAGCACGGCTTGTCCGGCACCGTCACATTGCTTCCCT
CCGTCACGTACGACAAGCAGTCCGACATGTTCAGTACCTTCGTCAAACAG
TCGTCCTCGGGCGAGGGTGACGGCCCGAAGGCCATAGATGGCCCCGGCGC
CAACGCCTGGCCTGACGAAGAGCCGATACAAGAAACCATTATTAAGAAGA
AAGCAGCGGCGGCGGCTGCGGTTGCTGCTGCGCTGCGGTTTCCCTTTCCC
ATATTGGCGAATGACAAATATTTAAGTTAACTATTGCTGAGGTTTTGTGA
AGTGTTGTTATAGTTGTTATATTGTGGCGATTCCGGTGAAGTGCGTAAGT
GGTTTTTTTTTTGGATCTACAAACAACTATTAAAAGAATTTAGTTGTAGG
AAATTTCTGTACA
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