CV884852 | Citrus Genome Database

Overview


Name	CV884852
Unique Name	CV884852
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	795

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library UCRCS04-UCR	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11181	contig	Csv1_Contig11181:16..813.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 1.529e-86
Identity = 165/231 (71.43%), Postives = 186/231 (80.52%), Query Frame = 1

Query:  106 MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAASQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRL         PKYTSIKPLGDRVLVKIK  EEKT GGI LPS AQ+KPQ GEVVAVGEG+T+GK K+DI+V  G Q+IYSKYAGTE+EFN   HLI++EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAGGLLLTE +KEKPSIGTVIAVGPG LDEEG   PL ++ G+TV+YSKYAGND
Sbjct:    1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGND 231

HSP 2 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 1

Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELE-FNGANHLIVREDDVVGIL 558
            +KPL DRV +K+   EEKT GG+ L    + KP  G V+AVG G    + K+  + V  G+ V+YSKYAG + +  +G+N++ +R  DV+ IL
Sbjct:  160 LKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAIL 252

[Close]

BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.101e-74
Identity = 141/234 (60.26%), Postives = 175/234 (74.79%), Query Frame = 1

Query:  106 MATAQLTASSIKVPARSLTSFDGLRPSS----VKFASVGGAASQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            MA   LT++S  +   +L SF+GLR +S    +  +    + + RSFR L          KYTS+KPLGDRVL+K K VEEKT  GIFLP+AAQ KPQ+GEVVA+G GK VG  KL ++VK G +V+YSKY GTE+E +G++HLIV+EDD++GILETD++KDLKPLNDR+ IKVAE E  T+GGLLL E+SKEKPS GTV+A GPG LDEEGNR PL +  GNTV+YSKYAGND
Sbjct:    1 MAATHLTSTS-SLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGND 233

HSP 2 Score: 72.4034 bits (176), Expect = 3.255e-12
Identity = 36/93 (38.71%), Postives = 60/93 (64.52%), Query Frame = 1

Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELE-FNGANHLIVREDDVVGIL 558
            +KPL DR+L+K+  VE KT GG+ L  +++ KP  G VVA G G    +  ++ + V  G  V+YSKYAG + +  +G++++++R  DV+ +L
Sbjct:  162 LKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDVMAVL 254

[Close]

BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.469e-22
Identity = 49/94 (52.13%), Postives = 72/94 (76.60%), Query Frame = 1

Query:  283 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            ++KPLGDR+++KI   EEKT+ GI LP  A+ KPQ GEVVAVG GKT+   +K++  VK G +V+YSK+AG E+E +G  +LI+R+DD++ ++E
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95

HSP 2 Score: 75.485 bits (184), Expect = 3.845e-13
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1

Query:  577 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +LKPL DR+ IK+ EAEE T  G++L E +KEKP  G V+AVG G   ++G++    +  G+ V+YSK+AGN+
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNE 74

[Close]

BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.917e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 1

Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

HSP 2 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  580 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG +
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQY-IDGKKVELEVKVGDRVIFSKYAGTE 73

[Close]

BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.917e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 1

Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

HSP 2 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  580 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG +
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQY-IDGKKVELEVKVGDRVIFSKYAGTE 73

[Close]

BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.917e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 1

Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

HSP 2 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  580 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG +
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEY-IDGKKVELEVKVGDRVIFSKYAGTE 73

[Close]

BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.728e-22
Identity = 46/95 (48.42%), Postives = 70/95 (73.68%), Query Frame = 1

Query:  286 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILETDE 570
            IKPL DRV++K +  EEKT+ G+++P  A+ KPQ G V+AVG G+     K+++SVK G +V+Y KYAGTE+  +G  +LI+RE D++GI+E ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGIIEEEK 100

HSP 2 Score: 71.633 bits (174), Expect = 5.551e-12
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1

Query:  580 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +KPL+DRV IK    EE T  GL + + +KEKP  GTVIAVGPG + E G +  +S+  G+ V+Y KYAG +
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRV-ENGTKIEMSVKEGDKVLYGKYAGTE 76

[Close]

BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_DESVV (10 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.249e-21
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 1

Query:  283 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95

HSP 2 Score: 78.5666 bits (192), Expect = 4.541e-14
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 1

Query:  577 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG   ++G    +++  G+ V+++KYAG +
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTE 74

[Close]

BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_DESVH (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.249e-21
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 1

Query:  283 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95

HSP 2 Score: 78.5666 bits (192), Expect = 4.541e-14
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 1

Query:  577 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG   ++G    +++  G+ V+++KYAG +
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTE 74

[Close]

BLAST of CV884852 vs. ExPASy Swiss-Prot
Match: CH10_DESVM (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.937e-21
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 1

Query:  283 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 561
            ++KPL DRVLVK    EEKT GG+F+P  A+ KP  GEVVA G GK     KL  ++VK G  V++SKYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIKLDGVEHLVMREDDILAIIE 95

HSP 2 Score: 83.9593 bits (206), Expect = 1.081e-15
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1

Query:  577 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 795
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG + E+G    +++  G+TV++SKYAG +
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTE 74

The following BLAST results are available for this feature:

BLAST of CV884852 vs. ExPASy Swiss-Prot

BLAST of CV884852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490


Match Name	E-value	Identity	Description
CH10C_ARATH	1.529e-86	71.43	20 kDa chaperonin, chloroplastic OS=Arabidopsis th...	[more]
CH10C_SPIOL	5.101e-74	60.26	20 kDa chaperonin, chloroplastic OS=Spinacia olera...	[more]
CH10_NATTJ	3.469e-22	52.13	10 kDa chaperonin OS=Natranaerobius thermophilus (...	[more]
CH10_THEPX	5.917e-22	52.17	10 kDa chaperonin OS=Thermoanaerobacter sp. (strai...	[more]
CH10_THEP3	5.917e-22	52.17	10 kDa chaperonin OS=Thermoanaerobacter pseudethan...	[more]
CH10_THEBR	5.917e-22	52.17	10 kDa chaperonin OS=Thermoanaerobacter brockii GN...	[more]
CH10_RHOMR	7.728e-22	48.42	10 kDa chaperonin OS=Rhodothermus marinus GN=groS ...	[more]
CH10_DESVV	2.249e-21	52.13	10 kDa chaperonin OS=Desulfovibrio vulgaris subsp....	[more]
CH10_DESVH	2.249e-21	52.13	10 kDa chaperonin OS=Desulfovibrio vulgaris (strai...	[more]
CH10_DESVM	2.937e-21	53.19	10 kDa chaperonin OS=Desulfovibrio vulgaris (strai...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS04_2_011A05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_A05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV884852 ID=CV884852; Name=CV884852; organism=Citrus sinensis; type=EST; length=795bp
TCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACTCGCTCG
CTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCT
GCAAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCCAGCA
AGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGTTCGC
TTCCGTCGGAGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTTGGTCGTTA
AAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTTGGGT
GATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATGGTGG
TATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCAAGCAGGTGAGGTGG
TAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGGCTAAACTGGACATATCT
GTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTGAGTT
GGAGTTCAACGGCGCAAATCATCTCATAGTGAGGGAGGATGACGTAGTTG
GCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGACAGA
GTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACTGCTGGAGGTTTGTT
GTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGGAACGGTCATTGCTG
TTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGAAACCTCTATCCATT
GCACCAGGGAACACGGTGATGTATTCGAAGTATGCAGGGAATGAC