CV884851

Overview
NameCV884851
Unique NameCV884851
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length955
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7427 contig Csv1_Contig7427:73..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: RDX_DROME (Protein roadkill OS=Drosophila melanogaster GN=rdx PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.634e-19
Identity = 58/154 (37.66%), Postives = 82/154 (53.25%), Query Frame = -3
Query:  375 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 836
            LG+ F +N   SDVT  V GR F AH+  L A SD F AMF+    E+    + I ++  EV + M+RFIYTG       +A DLL AAD+Y LE LK +CE  +  ++S+E  +    L++   A  L+   I +I  H   +    G  N+I
Sbjct:  645 LGNLF-DNEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTIDFINTHATDVMETSGWQNMI 797          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: ABTB2_MOUSE (Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Mus musculus GN=Abtb2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.804e-18
Identity = 52/160 (32.50%), Postives = 93/160 (58.13%), Query Frame = -3
Query:  375 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFIYTGSVD----VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 836
            L   F+NN  +SDVTFLVEG+ FYAH++ L+ +S+ F+ +      +    ++ IEI +I++ +F+++M+++Y G  +     T DI Q LL AA+ + L+ L+R CE   +Q +S+E+  + Y+ ++  +A  L   C  + ++H   L  +     LI
Sbjct:  833 LDPHFLNNKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDSSKTIEISDIKYHIFQMLMQYLYYGGTESMEIPTADILQ-LLSAANLFQLDALQRHCEILCSQTLSVESAVNTYKYAKIHNAPELALFCEGFFLKHMKALLEQDAFRQLI 991          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: ABTB2_RAT (Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Rattus norvegicus GN=Abtb2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.076e-18
Identity = 50/150 (33.33%), Postives = 91/150 (60.67%), Query Frame = -3
Query:  405 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFIYTGSVD----VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKL 836
            L   F+NN  +SDVTFLVEG+ FYAH++ L+ +S+ F+ +      +   +++ IEI +I++ +F+++M+++Y G  +     T DI Q LL AA+ + L+ L+R CE   +Q +S+E+  + Y+ ++  +A  L   C  + ++H   L
Sbjct:  832 LDPHFLNNKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDNSKTIEISDIKYHIFQMLMQYLYYGGTESMEIPTADILQ-LLSAANLFQLDALQRHCEILCSQTLSVESAVNTYKYAKIHNAPELALFCEGFFLKHMKAL 980          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: ABTB2_HUMAN (Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Homo sapiens GN=ABTB2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.076e-18
Identity = 49/159 (30.82%), Postives = 92/159 (57.86%), Query Frame = -3
Query:  375 LGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFIYTG---SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI 836
            L   F+NN  +SDVTFLVEG+ FYAH++ L+ +S+ F+ +      +    ++ IEI ++++ +F++MM+++Y G   S+++      +LL AA  + L+ L+R CE   +Q +S+E+  + Y+ ++  +A  L   C  + ++H   L  +     LI
Sbjct:  648 LDPHFLNNKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDSSKTIEISDMKYHIFQMMMQYLYYGGTESMEIPTTDILELLSAASLFQLDALQRHCEILCSQTLSMESAVNTYKYAKIHNAPELALFCEGFFLKHMKALLEQDAFRQLI 806          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: TDPZ2_MOUSE (TD and POZ domain-containing protein 2 OS=Mus musculus GN=Tdpoz2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.018e-18
Identity = 51/150 (34.00%), Postives = 86/150 (57.33%), Query Frame = -3
Query:  372 NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV--TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQ 815
            N+  +D + LV G  F AH++ L A S  FRAMF+    E+ A   EI  + ++VF+ MM FIYTG      +  +A D+L AAD+Y LEGLK +CE ++ +++S+EN +    +++      L+   + +I  H  ++S   G  ++++
Sbjct:  184 NSLFTDCSLLVAGHEFRAHKVILAARSPVFRAMFEHQMEERLANCFEIQELDFQVFKEMMDFIYTGKAPTLHSHSMACDVLAAADKYGLEGLKVICEDSLCRNLSVENAAHTLIVADLHSTEQLKTRALHFIAVHASEVSKSSGWKSMVE 333          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: SPOPL_MOUSE (Speckle-type POZ protein-like OS=Mus musculus GN=Spopl PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.527e-17
Identity = 58/174 (33.33%), Postives = 87/174 (50.00%), Query Frame = -3
Query:  426 DGAVALF---KLANKATTLSSVDAAPPSPTPQVYLGDQFVN---NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYI 929
            D  + LF    +   +  +S   +   S  P+  L +   N   N   +D  F V G+ F AH+  L A S  F AMF+    E     +EI ++  EVF+ MMRF+YTG       +A +LL AAD+Y LE LK +CE  +  ++S+ENV+    L++   A  L+   I +I
Sbjct:  152 DDKLTLFCEVSVVQDSVNVSGHTSTNTSKVPECRLAEDLGNLWENTRFTDCCFFVRGKEFKAHKSVLAARSPVFNAMFEHEMEECTKNRVEINDLDPEVFKEMMRFVYTGKAPNLDKMADNLLAAADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFI 325          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: SPOPL_HUMAN (Speckle-type POZ protein-like OS=Homo sapiens GN=SPOPL PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.527e-17
Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = -3
Query:  426 PQVYLGDQFVN---NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYI 848
            P+  L +   N   N   +D +F V G+ F AH+  L A S  F AMF+    E     +EI ++  EVF+ MMRFIYTG       +A +LL AAD+Y LE LK +CE  +  ++S+ENV+    L++   A  L+   I +I
Sbjct:  182 PECRLAEDLGNLWENTRFTDCSFFVRGQEFKAHKSVLAARSPVFNAMFEHEMEESKKNRVEINDLDPEVFKEMMRFIYTGRAPNLDKMADNLLAAADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFI 325          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: SPOP_XENTR (Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.401e-17
Identity = 55/178 (30.90%), Postives = 88/178 (49.44%), Query Frame = -3
Query:  333 PQVYLGDQFVN---NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI---QRIIPEIHNYFAKA 848
            P+  L D+      N+  +D    V G+ F AH+  L A S  F AMF+    E     +EI ++  +VF+ MM FIYTG       +A DLL AAD+Y LE LK +CE  +  ++S+EN + +  L++   A  L+   + +I  H   +    G  +++     ++ E +   A A
Sbjct:  182 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHPHLVAEAYRSLASA 359          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: SPOPB_XENLA (Speckle-type POZ protein B OS=Xenopus laevis GN=spop-B PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.401e-17
Identity = 55/178 (30.90%), Postives = 88/178 (49.44%), Query Frame = -3
Query:  333 PQVYLGDQFVN---NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI---QRIIPEIHNYFAKA 848
            P+  L D+      N+  +D    V G+ F AH+  L A S  F AMF+    E     +EI ++  +VF+ MM FIYTG       +A DLL AAD+Y LE LK +CE  +  ++S+EN + +  L++   A  L+   + +I  H   +    G  +++     ++ E +   A A
Sbjct:  182 PECRLSDELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHPHLVAEAYRSLASA 359          
BLAST of CV884851 vs. ExPASy Swiss-Prot
Match: SPOPA_XENLA (Speckle-type POZ protein A OS=Xenopus laevis GN=spop-A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.401e-17
Identity = 55/178 (30.90%), Postives = 88/178 (49.44%), Query Frame = -3
Query:  333 PQVYLGDQFVN---NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLI---QRIIPEIHNYFAKA 848
            P+  L D+      N+  +D    V G+ F AH+  L A S  F AMF+    E     +EI ++  +VF+ MM FIYTG       +A DLL AAD+Y LE LK +CE  +  ++S+EN + +  L++   A  L+   + +I  H   +    G  +++     ++ E +   A A
Sbjct:  182 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHPHLVAEAYRSLASA 359          
The following BLAST results are available for this feature:
BLAST of CV884851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RDX_DROME3.634e-1937.66Protein roadkill OS=Drosophila melanogaster GN=rdx... [more]
ABTB2_MOUSE1.804e-1832.50Ankyrin repeat and BTB/POZ domain-containing prote... [more]
ABTB2_RAT3.076e-1833.33Ankyrin repeat and BTB/POZ domain-containing prote... [more]
ABTB2_HUMAN3.076e-1830.82Ankyrin repeat and BTB/POZ domain-containing prote... [more]
TDPZ2_MOUSE4.018e-1834.00TD and POZ domain-containing protein 2 OS=Mus musc... [more]
SPOPL_MOUSE1.527e-1733.33Speckle-type POZ protein-like OS=Mus musculus GN=S... [more]
SPOPL_HUMAN1.527e-1737.50Speckle-type POZ protein-like OS=Homo sapiens GN=S... [more]
SPOP_XENTR3.401e-1730.90Speckle-type POZ protein OS=Xenopus tropicalis GN=... [more]
SPOPB_XENLA3.401e-1730.90Speckle-type POZ protein B OS=Xenopus laevis GN=sp... [more]
SPOPA_XENLA3.401e-1730.90Speckle-type POZ protein A OS=Xenopus laevis GN=sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884851 ID=CV884851; Name=CV884851; organism=Citrus sinensis; type=EST; length=955bp
CTCACGAATTCATTTCAGTGAATAGTCATAAAATACATTTCGAGACATAC
AACCATCACAATCCATGAAAATCAATAATGTTTTGTGAAGGTTATATTTC
AAGCAGTACCTACAACAATTAACTTGAAGAAGCAACTTACAGTCTACAAC
CAACATAACTCTGGCATCAGGAAATGATTATGAGCCACACTACAATCAAC
CAATTAGGAGCTTCACTTGACTTGATATCAGTGAAAAGATCTACTATTTT
CTGTACATCATAACTAGTTAGCGATCAAGAATCAATGACTGGCCATCTAC
AGCCGCGAATTATGTGGGTTAGGTTTGGTGAGAGCTTTTGCAAAGTAATT
GTGGATCTCTGGAATGATACGCTGGATCAGATTAGAATGCCCGGGCCTAG
TACTCAATTTATCAAAGTGCTCCATGATATACAAGATGCATGTGTGCCTC
AATGATATAGCATGAAAAGCTTCTGAAAGTTCGTACATGCTAGAAACATT
TTCCAAAGATATATCCTGTGCAATGGTATATTCACAGAGTCGCTTAAGTC
CCTCCAAGAGATACTGATCAGCCGCTCTAAGGAGATCTTGTGCAATATCC
AATGTAACATCAACAGATCCAGTGTAGATAAATCTCATCATCAACTCAAA
CACTTCCCATCTAATGTTTGGAATTTCAATGTCCCTAGCATCCTTTTCCC
GGTAACCACCATCAAACATTGCACGGAATGCATCTGAAGATGCAAGTAGA
CAAATTCGGTGGGCATAGAAACGTCTTCCTTCAACTAGAAAGGTAACGTC
TGACAACGTAGCATTGTTTACAAACTGGTCCCCTAAATAGACCTGAGGGG
TTGGAGATGGGGGAGCTGCATCAACAGAAGAAAGAGTTGTTGCTTTGTTT
GCCAACTTGAACAAAGCCACAGCACCATCAAGTTGCTGCTTTGGGTTTGT
TGAAC
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