CV884841

Overview
NameCV884841
Unique NameCV884841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884841_ssr840 microsatellite CV884841_ssr840:840..851. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12604 contig Csv1_Contig12604:54..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884841 vs. ExPASy Swiss-Prot
Match: PCY1B_HUMAN (Choline-phosphate cytidylyltransferase B OS=Homo sapiens GN=PCYT1B PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.827e-65
Identity = 124/224 (55.36%), Postives = 155/224 (69.20%), Query Frame = 3
Query:   84 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMXXXXXXXXXXXXXXRVGEKIQTVAMHRNE----WVENADRWVAGFLEMF 743
            P+DRPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM E ERYE+LRHC++VDEVI DAPW +T EFL+KH+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EKR R                 R  E +  V    ++    W E +  ++  FLE+F
Sbjct:   72 PADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELF 293          
BLAST of CV884841 vs. ExPASy Swiss-Prot
Match: PCY1B_RAT (Choline-phosphate cytidylyltransferase B OS=Rattus norvegicus GN=Pcyt1b PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 9.066e-65
Identity = 123/224 (54.91%), Postives = 154/224 (68.75%), Query Frame = 3
Query:   84 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMXXXXXXXXXXXXXXRVGEKIQTVAMHRNE----WVENADRWVAGFLEMF 743
            P DRPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM E ERYE+LRHC++VDEVI DAPW +T EFL+KH+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+ R                 R  E +  V    ++    W E +  ++  FLE+F
Sbjct:   72 PVDRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELF 293          
BLAST of CV884841 vs. ExPASy Swiss-Prot
Match: PCY1B_MOUSE (Choline-phosphate cytidylyltransferase B OS=Mus musculus GN=Pcyt1b PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 9.066e-65
Identity = 123/224 (54.91%), Postives = 154/224 (68.75%), Query Frame = 3
Query:   84 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMXXXXXXXXXXXXXXRVGEKIQTVAMHRNE----WVENADRWVAGFLEMF 743
            P DRPVRVYADGI+DLFH GHAR+L QAK  FPN+YLLVG C+D+ THKFKG TVM E ERYE+LRHC++VDEVI DAPW +T EFL+KH+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+ R                 R  E +  V    ++    W E +  ++  FLE+F
Sbjct:   72 PVDRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELF 293          
BLAST of CV884841 vs. ExPASy Swiss-Prot
Match: PCY1A_RAT (Choline-phosphate cytidylyltransferase A OS=Rattus norvegicus GN=Pcyt1a PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 3.225e-62
Identity = 116/224 (51.79%), Postives = 153/224 (68.30%), Query Frame = 3
Query:   84 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMXXXXXXXXXXXXXXRVGEKIQTVAMHR----NEWVENADRWVAGFLEMF 743
            P +RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TVM E+ERY++++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+  +                +  E +Q V         +W E +  ++  FLEMF
Sbjct:   72 PCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYHLQERVDKVKKKVKDVEEKSKEFVQKVEEKSIDLIQKWEEKSREFIGSFLEMF 293          
BLAST of CV884841 vs. ExPASy Swiss-Prot
Match: PCY1A_HUMAN (Choline-phosphate cytidylyltransferase A OS=Homo sapiens GN=PCYT1A PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 3.225e-62
Identity = 116/224 (51.79%), Postives = 153/224 (68.30%), Query Frame = 3
Query:   84 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMXXXXXXXXXXXXXXRVGEKIQTVAMHR----NEWVENADRWVAGFLEMF 743
            P +RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TVM E+ERY++++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+  +                +  E +Q V         +W E +  ++  FLEMF
Sbjct:   72 PCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYHLQERVDKVKKKVKDVEEKSKEFVQKVEEKSIDLIQKWEEKSREFIGSFLEMF 293          
BLAST of CV884841 vs. ExPASy Swiss-Prot
Match: PCY1A_MOUSE (Choline-phosphate cytidylyltransferase A OS=Mus musculus GN=Pcyt1a PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.211e-62
Identity = 116/224 (51.79%), Postives = 153/224 (68.30%), Query Frame = 3
Query:   84 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMXXXXXXXXXXXXXXRVGEKIQTVAMHR----NEWVENADRWVAGFLEMF 743
            P +RPVRVYADGI+DLFH GHAR+L QAK  FPNTYL+VG C+DE TH FKG TVM E+ERY++++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+  +                +  E +Q V         +W E +  ++  FLEMF
Sbjct:   72 PCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPY--SSAGSDDVYKHIKDAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYHLQERVDKVKKKVKDVEEKSKEFVQKVEEKSIDLIQKWEEKSREFIGSFLEMF 293          
BLAST of CV884841 vs. ExPASy Swiss-Prot
Match: PCY1A_CRIGR (Choline-phosphate cytidylyltransferase A OS=Cricetulus griseus GN=PCYT1A PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.730e-61
Identity = 115/224 (51.34%), Postives = 151/224 (67.41%), Query Frame = 3
Query:   84 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMXXXXXXXXXXXXXXRVGEKIQTVAMHR----NEWVENADRWVAGFLEMF 743
            P +RPVRVYADGI+DLFH GHAR+L QAK  FPNTY +VG C+DE TH FKG TVM E+ERY++++HC++VDEV+ +APW +T EFL +H+IDFVAHD +PY  +S    DVY+ +K AG F  T+RT+GISTSDII RIV+DY+ Y  RNL RGY+ K+L VS++ EK+  +                +  E +Q V          W E +  ++  FLEMF
Sbjct:   72 PCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYPIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPY--SSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKKYHLQERVDKVKKKVKDVEEKSKEFVQKVEERSIDLIQTWEEKSREFIGSFLEMF 293          
BLAST of CV884841 vs. ExPASy Swiss-Prot
Match: PCY1_SCHPO (Probable choline-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe GN=SPCC1827.02c PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 1.147e-59
Identity = 110/172 (63.95%), Postives = 135/172 (78.49%), Query Frame = 3
Query:   84 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYA-DASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRL 596
            P  RPVRVYADG++DLFH GH R LEQAKK FPN +L+VG  ND+ TH+ KG TVM + ER E+LRHCKWVDEV+ +APWV+T EFL++H+IDFVAHD +PYA D SG   D+Y  VK  GKF  TKRT+G+STSD+I RI++DY+QYVMRNL RG +RK+L VS  K+  L
Sbjct:   97 PEGRPVRVYADGVFDLFHIGHMRQLEQAKKVFPNVHLIVGLPNDQLTHRLKGLTVMNDKERAEALRHCKWVDEVLENAPWVITPEFLEEHKIDFVAHDDIPYASDDSG---DIYLPVKKVGKFIPTKRTEGVSTSDLITRIIRDYDQYVMRNLARGVNRKELNVSLFKKNEL 265          
BLAST of CV884841 vs. ExPASy Swiss-Prot
Match: PCY1_YEAST (Choline-phosphate cytidylyltransferase OS=Saccharomyces cerevisiae GN=PCT1 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.312e-55
Identity = 95/171 (55.56%), Postives = 134/171 (78.36%), Query Frame = 3
Query:   84 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRL 596
            P+DRP+R+YADG++DLFH GH + LEQ KK+FPN  L+VG  +D+ THK KG TV+T+ +R E+L HC+WVDEV+P+APW VT EFL +H+ID+VAHD +PY  A     D+Y+ +K  GKF  T+RT+G+STSDII +I++DY++Y+MRN  RG +R++L VS++K+  L
Sbjct:   99 PTDRPIRIYADGVFDLFHLGHMKQLEQCKKAFPNVTLIVGVPSDKITHKLKGLTVLTDKQRCETLTHCRWVDEVVPNAPWCVTPEFLLEHKIDYVAHDDIPYVSAD--SDDIYKPIKEMGKFLTTQRTNGVSTSDIITKIIRDYDKYLMRNFARGATRQELNVSWLKKNEL 267          
BLAST of CV884841 vs. ExPASy Swiss-Prot
Match: PCY1_CAEEL (Putative choline-phosphate cytidylyltransferase OS=Caenorhabditis elegans GN=F08C6.2 PE=2 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 9.404e-54
Identity = 92/170 (54.12%), Postives = 127/170 (74.71%), Query Frame = 3
Query:   93 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRV 602
            RPVR+YADGIYDLFH GHA  L Q KK FPN YL+VG C D  THK+KG+TV +E+ERY+ +RHC++VDEV  +APW  T EFL   ++DF+AHD++PY   +   +D+YE  +  G F ET+RT+G+STSD++ RI++DY++YV RNL RGYS K+L V ++   + ++
Sbjct:   79 RPVRIYADGIYDLFHHGHANQLRQVKKMFPNVYLIVGVCGDRDTHKYKGRTVTSEEERYDGVRHCRYVDEVYREAPWFCTVEFLKNLKVDFIAHDAIPY--VAPGEEDLYEKFRREGMFLETERTEGVSTSDVVCRIIRDYDKYVRRNLQRGYSPKELNVGFLAASKYQI 246          
The following BLAST results are available for this feature:
BLAST of CV884841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PCY1B_HUMAN1.827e-6555.36Choline-phosphate cytidylyltransferase B OS=Homo s... [more]
PCY1B_RAT9.066e-6554.91Choline-phosphate cytidylyltransferase B OS=Rattus... [more]
PCY1B_MOUSE9.066e-6554.91Choline-phosphate cytidylyltransferase B OS=Mus mu... [more]
PCY1A_RAT3.225e-6251.79Choline-phosphate cytidylyltransferase A OS=Rattus... [more]
PCY1A_HUMAN3.225e-6251.79Choline-phosphate cytidylyltransferase A OS=Homo s... [more]
PCY1A_MOUSE4.211e-6251.79Choline-phosphate cytidylyltransferase A OS=Mus mu... [more]
PCY1A_CRIGR2.730e-6151.34Choline-phosphate cytidylyltransferase A OS=Cricet... [more]
PCY1_SCHPO1.147e-5963.95Probable choline-phosphate cytidylyltransferase OS... [more]
PCY1_YEAST1.312e-5555.56Choline-phosphate cytidylyltransferase OS=Saccharo... [more]
PCY1_CAEEL9.404e-5454.12Putative choline-phosphate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884841 ID=CV884841; Name=CV884841; organism=Citrus sinensis; type=EST; length=907bp
CTTCGATCGAGGAGAACGCCAATAACAGCAGCGAAAAAATGAGTAACGCA
AATTCGAATAATTCAAATTCGACTGATACGGCGCCGTCTGATCGCCCCGT
TAGAGTCTACGCCGATGGGATCTACGATCTTTTCCATTTCGGCCACGCTC
GCTCCCTTGAACAAGCCAAGAAATCGTTTCCAAACACCTACCTCCTTGTC
GGATGCTGCAATGATGAAACTACTCATAAGTTTAAGGGCAAAACTGTTAT
GACAGAGGATGAGCGCTACGAATCTCTTCGTCATTGCAAATGGGTGGATG
AAGTCATCCCCGATGCACCTTGGGTGGTCACGCAAGAATTTCTTGACAAG
CACCAGATTGACTTTGTGGCTCATGACTCCCTTCCTTATGCCGATGCCAG
TGGTGCCGGAAAAGATGTTTATGAATTTGTTAAAGCTGCTGGGAAGTTTA
AGGAAACAAAACGAACTGATGGGATTTCAACATCAGACATTATTATGAGA
ATTGTTAAAGACTATAACCAGTATGTGATGCGTAACTTGGATCGAGGATA
TTCAAGAAAAGACCTTGGTGTTAGCTATGTAAAGGAAAAACGGCTGAGGG
TTAACATGAAATTAAAGAAACTGCAAGAGAAAGTGAAACAACAACAAGAG
CGTGTTGGAGAAAAGATCCAAACCGTTGCAATGCATCGTAATGAGTGGGT
GGAAAATGCTGATCGCTGGGTTGCTGGTTTCCTTGAGATGTTTGAAGAAG
GTTGCCATAAGATGGGCACAGCCATCAGGGATCGAATTCAAGAGCGATTA
AGAGGGCAGGGGTCGGGCAAGTATCTACTGCCAAATGGTGAGGAGGAGGA
GGATGATGACGAAGAATATTATTATGATGAGGATGATTATTTTGATGAAG
AAGAAGA
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