CV884835

Overview
NameCV884835
Unique NameCV884835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10005 contig Csv1_Contig10005:22..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP24_ARATH (Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 1.059e-86
Identity = 164/223 (73.54%), Postives = 185/223 (82.96%), Query Frame = -2
Query:  217 ANTALVSLAEED--EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAHGNKASATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 879
            + ++++S A +D  EWETVGPKNKSAVTRTQSF+PS LS+IFGGQLKSVVKA G KASATVQP+LLLH+DI+ + V  IEDAL LFSA E+LEGYR S TG  GVV+A KS+KIQ LSKI+ILHLMRFSYGSQGSTKL K V+FPL+L L R  LV+ S E  +YELVAT+THHG DPSKGHYTTDAR  N QWL FDDASVT IGT  VLHDQAYVLFYKQV
Sbjct:  329 SKSSVISSANDDGDEWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPDGVQGIEDALHLFSAQEDLEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQGSTKLRKGVKFPLELNLNRSHLVSLSNESLRYELVATITHHGWDPSKGHYTTDARRKNGQWLRFDDASVTPIGTKLVLHDQAYVLFYKQV 551          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBPB_DICDI (Ubiquitin hydrolase B OS=Dictyostelium discoideum GN=ubpB PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.511e-37
Identity = 90/214 (42.06%), Postives = 129/214 (60.28%), Query Frame = -2
Query:  217 EDEWETVGPKNKSAV-TRTQSFLPSA-LSDIFGGQLKSVVKAHGNKASATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDA-RYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 849
            +D WE VG K K+A+ T +Q  LP   +S IF G L+S     G+K S TV+PF  LH+DI  E ++++EDAL+ F  PE +EGY T ST     ++A KS   ++L +ILI+H  RF++ S  S KL K +RFP QL L      +     +KY L + V+HHGR  S+GHYT D  +    QW+ +DD++ T +    VL+ +AY+L Y+ V
Sbjct:  242 DDNWEVVGKKGKTAIITNSQQELPKTPISQIFSGVLRSSFNRTGSKESITVEPFYCLHLDIRPEEINSLEDALKFFMKPEIIEGY-TCSTKKI-EISASKSWSFESLPRILIVHFKRFAFESDTSKKLDKLIRFPTQLSLS---TASNHQTQKKYSLFSVVSHHGRGLSQGHYTCDIYQPQQAQWIRYDDSTFTEVKEQDVLNREAYLLLYQLV 450          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP10_HUMAN (Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo sapiens GN=USP10 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.239e-36
Identity = 86/223 (38.57%), Postives = 129/223 (57.85%), Query Frame = -2
Query:  217 EDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAHGNKASATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGS-TKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHYTTDARYFN-DQWLHFDDASVTAIGTSKVL----HDQAYVLFYKQV 849
            EDEWE VGP+NK++VTR   F+ + ++ IFGG ++SVV    +K SAT+QPF  L +DI S+ + T++DAL    A E+++GY T +      V   + V ++ L  +L+LHL RF Y   G   KL K++ +P+ L + ++LL +P  +       R Y L A V HHG   + GHYTTD      + WL  DD +V  I   +V+       AY+L+Y++V
Sbjct:  577 EDEWEQVGPRNKTSVTRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDALESLVARESVQGYTTKTKQE---VEISRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLIKNIEYPVDLEISKELL-SPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQYQVVKPTAERTAYLLYYRRV 795          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP10_MOUSE (Ubiquitin carboxyl-terminal hydrolase 10 OS=Mus musculus GN=Usp10 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.451e-35
Identity = 86/223 (38.57%), Postives = 128/223 (57.40%), Query Frame = -2
Query:  217 EDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAHGNKASATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGS-TKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHYTTDARYFN-DQWLHFDDASVTAIGTSKVLHD----QAYVLFYKQV 849
            EDEWE VGPKNK+++TR   F+ + ++ IFGG ++SVV    +K SAT+Q F  L +DI S+ + T++DAL    A E+++GY T +      V   + V ++ L  +L+LHL RF Y   G   KL K++ +P+ L + R+LL +P  +       R Y L A V HHG   + GHYTTD      + WL  DD +V  I   +V+       AY+L+Y++V
Sbjct:  571 EDEWEQVGPKNKTSITRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQLFFTLQLDIQSDKIRTVQDALESLVARESVQGYTTKTKQE---VEVSRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLVKNIDYPVDLEISRELL-SPGIKNKNFKCQRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQYQVVKPPADRTAYLLYYRRV 789          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP3_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 3 OS=Schizosaccharomyces pombe GN=ubp3 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.900e-27
Identity = 80/233 (34.33%), Postives = 120/233 (51.50%), Query Frame = -2
Query:  226 SLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAHGNKASATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST-KLHKSVRFPLQLVLGRDLLVTPSAEGR---KYELVATVTHHGRDPSKGHYTTDARYFNDQ-WLHFDDASVTAI--------------GTSKVLHDQ--AYVLFY 861
            S  E   W  VG   K  + R+ +   S +S IFGGQL+S ++    + S  ++PF  L +DI +E +H++ DAL   +APE L  + +S     G VTA K + I++L  +LILHL RF Y + G T K +K + +P +L + +++  +PS  G    +Y+L A V HHG   S GHYT D +  +   W   DD  +  +                SK+ H    AY+LFY
Sbjct:  281 SSVEASGWTEVGKNKKPVIARSATVERSPISQIFGGQLRSTLRVPSARDSVLLEPFQPLQLDIQAEDIHSVIDALEHMTAPEILPEWHSSK----GNVTATKQMYIESLPPVLILHLKRFFYEASGGTQKNYKPIAYPARLSIPQNVF-SPSVRGSIHPEYDLNAVVYHHGTSASGGHYTVDVQQLDKSGWFRIDDTHIHRVPIHDVENSELSADPSLSKLGHGDRVAYLLFY 508          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP3_YEAST (Ubiquitin carboxyl-terminal hydrolase 3 OS=Saccharomyces cerevisiae GN=UBP3 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.249e-20
Identity = 73/250 (29.20%), Postives = 117/250 (46.80%), Query Frame = -2
Query:  220 EEDEWETV------GPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAHGNK--ASATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGS---------------TKLHKSVRFPLQLVLGRDLLV-------TPSAEGRKYELVATVTHHGRDPSKGHYTTDARYF-NDQWLHFDDASVTAIGTSKVLHD--------QAYVLFYKQ 852
            EE+ W  V      G K K+A  RT   +PS +S +FGGQ +SV+    NK   S T+ PF  + +DI    V+ +E A + FS  E L     SS+GN   V AKK   I  L ++L++   RFS+ +  +                K+ K +++  +L++  + +        T   + R+Y+L   + HHG     GHYT D  +  +++W   DD ++T +    VL           AY+L Y++
Sbjct:  665 EENGWHEVSGSSKRGKKTKTAAKRTVEIVPSPISKLFGGQFRSVLDIPNNKESQSITLDPFQTIQLDISDAGVNDLETAFKKFSEYELLP--FKSSSGND--VEAKKQTFIDKLPQVLLIQFKRFSFINNVNKDNAMTNYNAYNGRIEKIRKKIKYGHELIIPEESMSSITLKNNTSGIDDRRYKLTGVIYHHGVSSDGGHYTADVYHSEHNKWYRIDDVNITELEDDDVLKGGEEASDSRTAYILMYQK 910          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP8_HUMAN (Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.126e-18
Identity = 63/188 (33.51%), Postives = 94/188 (50.00%), Query Frame = -2
Query:  226 SALSDIFGGQLKSVVKAHG-NKASATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 780
            S +  +F GQ KS V+    +K S T + F+ L + + S +  T++D LRLFS  E L +  R   +       + K ++I  L  +L++HL RFSY  +   KL  SV FPL+ +     ++ P    +KY L +   H+G     GHYT   +     +W  FDD  V+ I  S V    AY+LFY
Sbjct:  920 SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1106          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP8_MOUSE (Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.782e-17
Identity = 62/188 (32.98%), Postives = 93/188 (49.47%), Query Frame = -2
Query:  226 SALSDIFGGQLKSVVKAHG-NKASATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 780
            S +  +F GQ KS V+     + S T + F+ L + + S +  T++D LRLFS  E L +  R   +       + K ++I  L  +L++HL RFSY  +   KL  SV FPL+ +     ++ P    +KY L +   H+G     GHYT   +     +W  FDD  V+ I  S V    AY+LFY
Sbjct:  882 SIIVALFQGQFKSTVQCLTCRRRSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1068          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: U17L5_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 5 OS=Homo sapiens GN=USP17L5 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.186e-17
Identity = 64/187 (34.22%), Postives = 93/187 (49.73%), Query Frame = -2
Query:  220 LSDIFGGQLKSVVKA-HGNKASATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 774
            +  IFGG  +S +K  H +  S T  P+L + +DI  +A  +++ AL   + PE L G      G       A K++ + T +K+LIL L RFS       K+ K+V++P  L + +  +  P+     Y L A + H G     GHY +  +    QW   DDA VTA   + VL  QAYVLFY Q
Sbjct:  193 IHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDI--QAAQSVQQALEQLAKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFS--DVTGNKIAKNVQYPECLDM-QPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQ 374          
BLAST of CV884835 vs. ExPASy Swiss-Prot
Match: UBP17_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo sapiens GN=USP17A PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.155e-16
Identity = 64/187 (34.22%), Postives = 92/187 (49.20%), Query Frame = -2
Query:  220 LSDIFGGQLKSVVKA-HGNKASATVQPFLLLHIDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTTDARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 774
            +  IFGG  +S +K  H +  S T  P+L + +DI  +A  +++ AL     PE L G      G       A K++ + T +K+LIL L RFS       K+ K+V++P  L + +  +  P+     Y L A + H G     GHY +  +    QW   DDA VTA   + VL  QAYVLFY Q
Sbjct:  193 IHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDI--QAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFS--DVTGNKIAKNVQYPECLDM-QPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQ 374          
The following BLAST results are available for this feature:
BLAST of CV884835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBP24_ARATH1.059e-8673.54Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabid... [more]
UBPB_DICDI4.511e-3742.06Ubiquitin hydrolase B OS=Dictyostelium discoideum ... [more]
UBP10_HUMAN2.239e-3638.57Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo s... [more]
UBP10_MOUSE1.451e-3538.57Ubiquitin carboxyl-terminal hydrolase 10 OS=Mus mu... [more]
UBP3_SCHPO1.900e-2734.33Probable ubiquitin carboxyl-terminal hydrolase 3 O... [more]
UBP3_YEAST2.249e-2029.20Ubiquitin carboxyl-terminal hydrolase 3 OS=Sacchar... [more]
UBP8_HUMAN6.126e-1833.51Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sa... [more]
UBP8_MOUSE1.782e-1732.98Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus mus... [more]
U17L5_HUMAN5.186e-1734.22Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
UBP17_HUMAN1.155e-1634.22Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884835 ID=CV884835; Name=CV884835; organism=Citrus sinensis; type=EST; length=883bp
AATGAAGCTTTCATTAATTTAACTTTATCAAGAACTTCCACTCATTTTCA
TTTTCATATCACATCAGTAAAATTGTTATAATCTTTCATATGCAATTAAC
AACATTTTAAAAACTACTTGTAAAATTAAGAAAACAGTTCAGCTACTGTC
ATTGGGTTGAATCCATCAGATATGGCTTCTTTCTCCCGTTGAAACTTATA
ATCCTGCAACCTTCTAAACTTGTTTGTAGAAAAGGACGTATGCCTGGTCA
TGCAATACCTTACTTGTCCCAATAGCAGTCACAGAGGCATCGTCAAAATG
GAGCCACTGGTCATTAAAATACCGAGCATCAGTAGTATAATGCCCCTTTG
AGGGATCTCTTCCATGGTGGGTAACAGTGGCAACAAGTTCATATTTTCGA
CCCTCAGCAGATGGAGTAACAAGCAGATCCCGACCCAAAACCAATTGAAG
AGGAAAACGGACAGATTTATGCAACTTTGTGCTCCCTTGGCTTCCATAAC
TAAAACGCATCAGGTGTAAAATCAAAATCTTTGAAAGCGTCTGTATCTTG
ACAGATTTTTTGGCAGTCACAACACCAGCATTTCCAGTAGATGATGTACG
GTATCCCTCAAGATTTTCTGGAGCAGAAAACAGACGAAGAGCATCCTCAA
TTGTATGCACAGCTTCAGAGTAAATATCAATGTGGAGCAAGAGAAATGGC
TGAACAGTTGCAGAAGCTTTATTTCCATGTGCCTTCACCACGCTTTTCAG
CTGTCCTCCAAATATATCACTAAGTGCTGAAGGCAGGAAGCTCTGTGTTC
TTGTCACTGCAGATTTGTTCTTTGGGCCAACTGTTTCCCATTCATCTTCT
TCTGCCAAAGAGACTAGAGCTGTATTGGCTCCG
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