CV884824

Overview
NameCV884824
Unique NameCV884824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884824 vs. ExPASy Swiss-Prot
Match: GLPQ_ECOLI (Glycerophosphoryl diester phosphodiesterase OS=Escherichia coli (strain K12) GN=glpQ PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.471e-12
Identity = 59/198 (29.80%), Postives = 89/198 (44.95%), Query Frame = -2
Query:  220 VGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILT-EDTNQSYSEITSDPYLNY-------------IKEYCVGIGPWKDTVVPVANNYSQMP-TDLVARAHALDLQVHPYTYRNEHEFLHFNFLQDPYGEYDYWINKIGVDGLFTDFP 768
            +GIYPE+K P F +Q     +GK    K ++ LKKYGY G           +++Q F    L  I N+ +      ++ V ++   D N++  +     ++NY             + EY  GIGP    ++   +    +  T +V  A    L VHPYT R++       +  D    YD   NK GV+GLFTDFP
Sbjct:  166 IGIYPEIKAPWFHHQ-----EGKDIAAKTLEVLKKYGYTGK-------DDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLP---EYTPDVNQLYDALYNKAGVNGLFTDFP 348          
The following BLAST results are available for this feature:
BLAST of CV884824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GLPQ_ECOLI1.471e-1229.80Glycerophosphoryl diester phosphodiesterase OS=Esc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010G12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884824 ID=CV884824; Name=CV884824; organism=Citrus sinensis; type=EST; length=799bp
AGGAATACCACTTTCTACCTGGCATTTAATAAAAATATTCTGAAATAATG
TTTCCACTGAGGTTGAAGGGAATGACCGAATGACAAGATTTACAAATGAT
TATCTATCTCACACCTTTCCATTCGACGAGATCAACACAGCAATTTTGTG
CAATAGTTTTGAAGCTCTGTGGTCTTTAGACACAGGAGAGGTCAATTCTT
GATAATTATGAAGGCTGCCTGGGAAGTCTGTGAACAGTCCATCAACTCCA
ATCTTGTTTATCCAGTAGTCGTATTCCCCATATGGATCTTGGAGAAAGTT
GAAGTGTAAGAACTCATGCTCGTTTCGGTAAGTGTATGGGTGCACCTGTA
GGTCAAGGGCATGTGCTCTTGCGACAAGATCTGTTGGCATCTGCGAATAA
TTATTTGCAACAGGAACTACTGTATCCTTCCAAGGTCCGATGCCCACACA
ATACTCCTTGATGTAGTTGAGATAAGGATCAGAAGTTATTTCTGAATATG
ACTGGTTTGTGTCTTCAGTTAGGATGTCGACATCATCAATTAAGAAGATC
TTGGGTGAGTCTGTCTTGTTTGATATATACACAAGTGAAGTTGGAGCAAA
GGATTGGATGAATATTGGTTGTTTCAACCACTCTTTTGACATATATGCAC
CCTTGTACCCATACTTCTTAAGTGTATCCACAAACTTATCCTCAAATTTC
TTACCATCCGCCCATTTTACATGCTGATTGATAAACACTGGATTCTTCAT
CTCTGGATATATCCCAACAACTCTTTGTGCATCTAGTGCAATTGGAGAG
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