CV884820

Overview
NameCV884820
Unique NameCV884820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV884820 vs. ExPASy Swiss-Prot
Match: ELF3_ARATH (Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.133e-32
Identity = 100/275 (36.36%), Postives = 138/275 (50.18%), Query Frame = 2 
Query:   17 MKRGKDDEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPTQRFST-GXXXXXXXXXXXXXXXXXXXQGNGLERNLLFAHSVHPSTPTHLDEKCHSDQPAGATLNTHLQHHEQSKKVSEEDDFAVPIFDQAGMGQCHGKSQSDVDKGNLSPFNPSNTRKSTKFQNACDKNPKRXXXXXXXLRQQGGHVCQENPKICISIGNFPAKSSVNLSIREKID--------GIVKEVSASPNQEYREISGSD--FSRINDSDAFFTTGVWSWLATK 808
            MKRGKD+EKI+ PMFPRLHVND +KGGPRAPPRNKMALYEQLSIP+QRF   G                   Q  G+ERNL   H +  S      EK  S       + +  Q H+Q K V EE+DFAVP++  +   Q HG+++S ++K   +P    ++  S +FQ       K+        + +     ++  K     G F    S+++S+ E+ID          V + +AS  QE R     D   +R+ D+D     G  S LAT+
Sbjct:    1 MKRGKDEEKILEPMFPRLHVNDADKGGPRAPPRNKMALYEQLSIPSQRFGDHGTMNSRSNNTSTLVHPGPSSQPCGVERNLSVQH-LDSSAANQATEKFVSQMSFMENVRSSAQ-HDQRKMVREEEDFAVPVYINSRRSQSHGRTKSGIEKEKHTPMVAPSSHHSIRFQEVNQTGSKQNVCLATCSKPE----VRDQVKANARSGGFVI--SLDVSVTEEIDLEKSASSHDRVNDYNASLRQESRNRLYRDGGKTRLKDTD----NGAESHLATE 263
The following BLAST results are available for this feature:
BLAST of CV884820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ELF3_ARATH9.133e-3236.36Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884820 ID=CV884820; Name=CV884820; organism=Citrus sinensis; type=EST; length=850bp
ATAGGTTGAAAAAAAAATGAAGAGAGGAAAAGATGATGAAAAGATCATGG
GACCAATGTTCCCTAGATTACATGTTAATGATACTGAGAAAGGAGGACCA
AGAGCACCGCCTAGGAACAAGATGGCCCTTTATGAACAGCTCAGTATCCC
TACTCAGAGGTTTAGTACCGGTGTTTTGCCTCTGAATCCATCAAACAGTA
GCAGTTTGGTTCCTCCAGTTTCTTCAAGCCAGGGGAATGGCCTTGAAAGA
AATTTGCTTTTCGCACATTCTGTACATCCTTCAACACCCACTCATTTGGA
TGAGAAGTGTCATTCTGACCAGCCTGCTGGAGCCACTTTGAACACTCATT
TGCAACATCATGAGCAGAGTAAGAAAGTAAGTGAGGAGGATGATTTTGCA
GTTCCTATATTCGATCAGGCAGGGATGGGACAATGTCATGGTAAATCTCA
AAGTGATGTTGATAAGGGAAACCTCTCTCCCTTTAACCCGTCTAATACCC
GTAAGTCTACAAAATTCCAAAATGCTTGCGATAAGAATCCAAAACGAAGT
AGCTCCTCTAGTATCAGTTTGAGACAACAGGGAGGACACGTTTGTCAAGA
GAACCCAAAGATTTGCATCTCAATTGGAAACTTTCCTGCAAAATCTTCTG
TGAATTTATCAATTAGAGAAAAGATTGATGGGATTGTGAAGGAAGTAAGT
GCATCTCCTAATCAAGAATATAGAGAAATCTCAGGATCTGATTTTAGCAG
AATAAATGATAGTGATGCTTTCTTTACGACTGGAGTCTGGAGCTGGCTTG
CCACCAAATGGTTGTTGTCCGTATGATGATGTTGACTCCACTGGGGATTT
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