CV884792

Overview
NameCV884792
Unique NameCV884792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884792_ssr493 microsatellite CV884792_ssr493:493..507. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13008 contig Csv1_Contig13008:17..552. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884792 vs. ExPASy Swiss-Prot
Match: FIL1_ANTMA (Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.022e-17
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:   31 MAAIKSMVSLSTKXXXXXXXXXXXXQTQM---THAQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQ 291
            MAA+KS+V L               Q+Q+   + AQ+C++ L NLN+CAP+VV G ATT PSSDCC ALQSVD +C CNT+RIA+R+P+Q
Sbjct:    1 MAAMKSIVPL-------VMLTVLVAQSQLITQSEAQTCSASLANLNACAPFVVLGAATT-PSSDCCTALQSVDHECLCNTLRIASRVPAQ 82
[Close]
BLAST of CV884792 vs. ExPASy Swiss-Prot
Match: MEN8_SILLA (Protein MEN-8 OS=Silene latifolia GN=MEN-8 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.305e-15
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:  124 AQSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPS 288
            A  C S+L NLN CAPYVVPG   T PS +CCAAL  V+ DC CNT+R+A++LPS
Sbjct:   35 AGGCASQLGNLNVCAPYVVPGAVNTNPSQECCAALSGVNHDCMCNTLRVASQLPS 89
[Close]
BLAST of CV884792 vs. ExPASy Swiss-Prot
Match: 108_SOLLC (Protein 108 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.368e-13
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:  127 QSCTSELTNLNSCAPYVVPGVATTTPSSDCCAALQSVDRDCFCNTVRIAARLPSQ 291
            QSCT+ LT LN CAP++VPG  + T S++CC A+QS++ DC CNT+RIAA++P+Q
Sbjct:   39 QSCTASLTGLNVCAPFLVPG--SPTASTECCNAVQSINHDCMCNTMRIAAQIPAQ 91
The following BLAST results are available for this feature:
BLAST of CV884792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FIL1_ANTMA6.022e-1752.22Stamen-specific protein FIL1 OS=Antirrhinum majus ... [more]
MEN8_SILLA3.305e-1561.82Protein MEN-8 OS=Silene latifolia GN=MEN-8 PE=3 SV... [more]
108_SOLLC2.368e-1358.18Protein 108 OS=Solanum lycopersicum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010F06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884792 ID=CV884792; Name=CV884792; organism=Citrus sinensis; type=EST; length=534bp
ATAAGAGCTAGATAAACTAATCAATTAGTGATGGCGGCAATCAAGTCAAT
GGTTTCCCTCAGCACCAAAGCTGCATTGCTTCTTCTGCTTATAGCGGTAG
CAGTGCAAACCCAGATGACTCATGCACAGAGCTGCACGTCTGAGCTCACC
AACCTCAACTCCTGTGCCCCGTATGTGGTCCCTGGCGTCGCGACCACAAC
TCCTTCCTCTGACTGCTGCGCCGCCCTCCAGTCTGTGGATCGCGACTGCT
TCTGCAACACCGTGAGGATCGCGGCTCGCCTTCCTAGCCAATGCAATCTC
CCACCTCTCAGTTGCACTCCTTGATTGTGATGCAGGCCAAGAATCAATGC
TTGGAGCCCAAGCGAGAGTTGTCAGCAAATAATGGCGGTTTTTTTTTTTT
TTTTTTTTCAATGTCGCGTTTTATGTAAGAGTCTGATACGCGACTGAACT
GTCAGTCAAGATCAGAGTACTTGGTTATATGAATTGAAGAGCAATAATAA
TAATAATGATGATATATTAAAAAAAAAAAAAAAA
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