CV884789

Overview
NameCV884789
Unique NameCV884789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884789 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 3.056e-87
Identity = 146/238 (61.34%), Postives = 184/238 (77.31%), Query Frame = 1
Query:  220 RPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGISYGRPSTKITI 933
            R HS S+ +FG VGDG TLNTKAFQ+A+  L+ +  +GGA+L+VPAG+WLTGSF L SH TL+L +DAV+L S +   WPVI PLPSYGRGR+   GR+ SLIFG NLTDV+ITGDNGTIDGQG +WW+ F  G L YTRP+L+ELM S  + ISNLT LN P W +HPVY  ++ +Q +TI AP+ SPNTDGI+PDS  +  I+DCYI +GDD V++KSGWDEYGI+YG P+ ++ I
Sbjct:   59 RAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVI 296          
BLAST of CV884789 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.018e-22
Identity = 84/239 (35.15%), Postives = 126/239 (52.72%), Query Frame = 1
Query:  208 LEVFRP-HSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPL------PSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGIS 903
            L++F   +++ +T+FGAVGDGVT +++AF  A   + S    G  +  VPAG            +T  L +     GS  S   PV   +      PS G  +   G + + ++F  ++  +VI GD G I+GQGS WWE    G+    RP  ++  +   + +S LT L+ P   IH   C++V + ++ I AP  SPNTDGID  +S +V I+DC I+TGDD ++I SG     IS
Sbjct:   15 LQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCS--GTGDGQFVVPAG------------MTFML-QPLKFQGSCKST--PVFVQMLGKLVAPSKGNWK---GDKDQWILF-TDIEGLVIEGD-GEINGQGSSWWE--HKGS----RPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHIS 225          
BLAST of CV884789 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 6.490e-21
Identity = 74/223 (33.18%), Postives = 106/223 (47.53%), Query Frame = 1
Query:  223 PHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWE--WFRNGTLDYTR-PHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSG 882
            P +VS+++FGA GDG T +T+AF NA  +  + +  G   L VP G               +L K   + G  NS     I    S  + R       + ++F       V  GD G +DG G  WW+    RN     T+ P  +   NS  +I+ NL   N     I    CS+V+V NV + AP DSPNTDGI   ++ ++ + +  I TGDD +SI+SG
Sbjct:   65 PTTVSVSDFGAKGDGKTDDTQAFVNA--WKKACSSNGAVNLLVPKGN-------------TYLLKSIQLTGPCNSILTVQIFGTLSASQKRSDYKDISKWIMFDGVNNLSVDGGDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG 272          
BLAST of CV884789 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.161e-16
Identity = 72/222 (32.43%), Postives = 105/222 (47.30%), Query Frame = 1
Query:  235 SITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWF------RNGTLDYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSG 882
            ++ ++GAVGDG   +T+AF       N+   K  A L VPA +        +++L         +  S   D   V  P P+  +  ++       L F + LTD  + G  G IDGQG  WW         R    D  RP  +++  S  V +  LT +N P + +    C  VK+Q + I+AP DSPNTDGID  +S    I+ C I TGDD ++I +G
Sbjct:   60 NVEQYGAVGDGKHDSTEAFATT---WNAACKKASAVLLVPANKKF-----FVNNLVFRGPCQPHL--SFKVDGTIVAQPDPARWKNSKI------WLQFAQ-LTDFNLMG-TGVIDGQGQQWWAGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG 263          
BLAST of CV884789 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.075e-15
Identity = 69/227 (30.40%), Postives = 101/227 (44.49%), Query Frame = 1
Query:  235 SITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLIS-----HLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWW----EWFRNGTL--DYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSG 882
            ++ ++GAVGDG    T+AF  A     +   K  A L VP  +    +    +     H T  +D   +I    N  +W                   +R  +    LT   + G  G IDGQG  WW    +W     +  D  RP  ++   STG+II  L  +N P + +    C  VK+  ++I AP DSPNTDGID  +S +  ++   I TGDD V+I +G
Sbjct:   60 NVEKYGAVGDGKHDCTEAFSTA---WQAACKKPSAMLLVPGNKKFVVNNLFFNGPCQPHFTFKVD--GIIAAYQNPASWK-----------------NNRIWLQFAKLTGFTLMG-KGVIDGQGKQWWAGQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTG 263          
BLAST of CV884789 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.951e-15
Identity = 70/222 (31.53%), Postives = 106/222 (47.75%), Query Frame = 1
Query:  235 SITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWW----EWFRNGTL--DYTRPHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSG 882
            ++  +GAVGDG   +T AF+      N+  +K  A   VPA +       ++++L  +         S   D      P P+  +  ++       + F R LTD  + G  G IDGQG+ WW    +     T+  D  RP  +++  S  V +  LT  N P + +    C  VK+Q + I+AP DSPNTDGID  +S    I+ C I TGDD V++ +G
Sbjct:   61 NVEHYGAVGDGKHDSTDAFEKT---WNAACNKLSAVFLVPANKKF-----VVNNLVFYGPCQPHF--SFKVDGTIAAYPDPAKWKNSKI------WMHFAR-LTDFNLMG-TGVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG 264          
BLAST of CV884789 vs. ExPASy Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.186e-14
Identity = 64/234 (27.35%), Postives = 110/234 (47.01%), Query Frame = 1
Query:  229 SVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLT--LWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVI-------ISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGIS 903
            S  IT+ GA G+G T +TKA Q A  + ++    G   + +P G +L G  +        + +  D  +L +T+   +                   H + I    + ++VITG  G +DGQG   W   +N     T+ +  +++ ++ V+       +S +T LN  F+ ++   C ++ +++VT+ AP DSPNTDGI    S  + I +  I  GDD +SI  G  +  I+
Sbjct:   40 SFDITKLGASGNGKTDSTKAVQEA--WASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYK-----------------EHGNWIEILRVDNLVITG-KGNLDGQGPAVWS--KNSC---TKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNIT 248          
BLAST of CV884789 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.450e-14
Identity = 70/223 (31.39%), Postives = 102/223 (45.74%), Query Frame = 1
Query:  223 PHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSD-TWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTR--PHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSG 882
            P    IT+FGAVGDG T   KAF N   ++        A L VP G +L G                +  G   S  T  VI  + +   G   P       +F R + ++V+TG  GT  G+G   W+    G        P  ++  N   V I+ ++ +N   + +  V   +V +QN+ + AP +SPNTDGI   ++D+V I D  I+TGDD VS+  G
Sbjct:   49 PTVYDITKFGAVGDGSTNTFKAFLNT--WIQVCDSPVPATLLVPKGTFLAGP--------------VIFAGPCKSKVTVNVIGTIIATTSGYATP----EWFLFER-VDNLVLTG-TGTFHGKGEAVWKADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRG 249          
BLAST of CV884789 vs. ExPASy Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.505e-14
Identity = 64/234 (27.35%), Postives = 109/234 (46.58%), Query Frame = 1
Query:  229 SVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLT--LWLDKDAVILGSTNSDTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTRPHLVELMNSTGVI-------ISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSGWDEYGIS 903
            S  IT+ GA G+G T +TKA Q A  + ++    G   + +P G +L G  +        + +  D  +L +T+   +                   H + I    + ++VITG  G +DGQG   W   +N     T+ +  +++ ++ V+       +S +T LN  F+ ++   C  + +++VT+ AP DSPNTDGI    S  + I +  I  GDD +SI  G  +  I+
Sbjct:   40 SFDITKLGASGNGKTDSTKAVQEA--WASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYK-----------------DHGNWIEILRVDNLVITG-KGNLDGQGPAVWS--KNSC---TKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNIT 248          
BLAST of CV884789 vs. ExPASy Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.004e-13
Identity = 63/224 (28.12%), Postives = 102/224 (45.54%), Query Frame = 1
Query:  229 SVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNS-DTWPVIDPLPSYGRGRELPGGRHRSLIFGRNLTDVVITGDNGTIDGQGSIWWEWFRNGTLDYTR-----PHLVELMNSTGVIISNLTFLNPPFWTIHPVYCSHVKVQNVTIRAPLDSPNTDGIDPDSSDDVCIKDCYISTGDDLVSIKSG 882
            +VS++ FGA GDG T +T+AF+ A  +  + +  G     VP G+              +L K     G   S   + ++  L +  +  +     H  ++   N    +  G  G I+G G  WW+   +  +D ++     P  + L N   + + NL   N     I    C+ V+V NV I AP DSPNTDGI   ++ ++ + +  I TGDD +SI+ G
Sbjct:   67 TVSVSNFGAKGDGKTDDTQAFKKA--WKKACSTNGVTTFLVPKGK-------------TYLLKSTRFRGPCKSLRNFQILGTLSASTKRSDYKDKNHWLILEDVNNLS-IDGGSTGIINGNGKTWWQ--NSCKIDKSKPCTKAPTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDG 272          
The following BLAST results are available for this feature:
BLAST of CV884789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PGLR_VITVI3.056e-8761.34Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
PGLR3_ARATH2.018e-2235.15Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
ADPG2_ARATH6.490e-2133.18Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR2_CHAOB2.161e-1632.43Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR2_CRYJA4.075e-1530.40Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]
PGLR2_JUNAS6.951e-1531.53Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
PGLR2_MAIZE1.186e-1427.35Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR1_ARATH3.450e-1431.39Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]
PGLR1_MAIZE4.505e-1427.35Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
ADPG1_ARATH1.004e-1328.13Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010F03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884789 ID=CV884789; Name=CV884789; organism=Citrus sinensis; type=EST; length=940bp
GATCAGTATCAGTTGGTGACTATCTCTGCTTGCTCGTGTCAGCAAGTGTT
AAAAAGCTTTGCTAAGGCGCTTGGGCTCTAGAGCAAAGCAGCAGATCCCA
TTCATATGAGGAGATCTTTTACTCTGGTGGATGTGTTTCTGGTACTTGCA
TTATTTAGTGAAGCTCCATGGGCTGTCGCGGGCAGCTCACAATGTAGTCA
AAGCAATTTAGAGGTATTTCGGCCTCATAGTGTCTCTATCACTGAATTTG
GAGCTGTCGGAGATGGTGTCACTCTAAACACCAAAGCCTTTCAGAATGCA
ATCTTCTATCTCAATTCATTTGCAGATAAGGGTGGGGCCAAGCTTTTTGT
CCCAGCTGGCCAGTGGTTGACAGGTAGCTTCGATCTCATCAGTCATCTAA
CTTTGTGGTTAGACAAGGATGCAGTAATTCTTGGATCCACGAACTCGGAC
ACTTGGCCGGTTATTGATCCTCTACCATCATATGGCAGAGGTAGGGAGTT
GCCTGGTGGAAGGCATCGGAGCCTCATTTTTGGACGCAATTTGACAGATG
TGGTCATAACAGGTGATAATGGAACTATTGATGGTCAAGGCAGCATCTGG
TGGGAATGGTTTCGAAATGGAACACTGGATTACACCCGACCTCATCTGGT
TGAATTGATGAACTCGACTGGGGTTATCATCTCAAATTTGACCTTCTTAA
ATCCACCATTTTGGACCATCCATCCTGTATACTGCAGCCATGTTAAAGTG
CAGAATGTCACAATCCGTGCCCCACTTGATTCACCAAACACAGATGGGAT
TGATCCAGACTCTTCTGACGATGTCTGCATTAAAGACTGTTATATTAGCA
CTGGCGATGATCTGGTTTCCATCAAAAGTGGGTGGGACGAGTATGGTATT
TCATATGGTCGGCCCAGTACAAAAATTACCATCCATGGAC
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