CV884788

Overview
NameCV884788
Unique NameCV884788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884788 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.994e-11
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = -2 
Query:  603 YDPSALPIIERITIKNVIGENVKMAGQLEGIEGDTFRYICLSNIKLNGVSES---PWNCSYIQGYSDLVFPETCDPLKE 830
            YDP A P+I+ I  ++++ ENV MA +LEGI  D F  IC+SN+ ++  +++   PW C+ ++G S  V P  C  L +
Sbjct:  379 YDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPD 457
The following BLAST results are available for this feature:
BLAST of CV884788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR_VITVI2.994e-1139.24Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_010F03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884788 ID=CV884788; Name=CV884788; organism=Citrus sinensis; type=EST; length=837bp
CCCCATTTCACATACTTATAATAAAATTCATCGTATACCAAAATGATCAA
ATACAAGGAAATCTTTCGGGAGAACAAAATTGCGCTACTTTCATGCATAG
CCTAAAGCAGCGGCAGAGTATACTCTCTATCCCATCATCCCCCACTTTTT
TTTACTCTTGCTGAAATTTCAAACAACAAACGCAGTCAGAAGAAAATAAT
AAACAATAAAATTAAAAAAGGAACGACCTTTGCAGAAGTAAGCTCATTCT
ATCTTCATTTCTGATATTCACTCAATTATTCGTAACTGCACACAAAATTA
CATGAAATAACCTTTTCTCAACACCATCTCGCAGGTCAACAACCACAGAT
CAGCACTTCACTTAACTCATATCAGGCAATCTTTTCATCGGCAATGCACT
GGGCGGTTGTGTTGAGAAATGGCAAGAATCAAATTTCCAACTAATGACAA
CATTCACAGAAGAAGGTGATTTCACCGGAGATAAAATGCCAAGATTCCAT
TATTTACCAAGATAATAAGCGAGCAAGTCTTTTTTGATTTCTTGAACTCC
TAAAATGATTGGATAGATCGTAACAATCTAAGTGATGCATGGGAAAGATA
CTCTCCTTCAGAGGATCACAGGTTTCTGGGAAAACCAAGTCAGAATATCC
TTGAATATAGGAGCAATTCCATGGAGACTCTGAAACTCCATTGAGCTTAA
TGTTTGACAAGCAAATGTAACGAAAAGTGTCCCCCTCTATACCTTCTAGC
TGGCCTGCCATTTTTACATTCTCCCCAATGACATTTTTTATGGTAATCCT
TTCTATTATGGGAAGAGCACTTGGATCATACGAATCA
back to top