EY665324

Overview
NameEY665324
Unique NameEY665324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1002
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 9.843e-71
Identity = 147/214 (68.69%), Postives = 158/214 (73.83%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE*GEELDPGYWWWK----PWPKTLWNPKEAPPKF 667
            ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAP        +      +       +G     N+  DD  V+LVDTFPGQS DFFGALRA++Y +     +   W  +       K L N KE PP F
Sbjct:  176 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNV-ADDDIVKLVDTFPGQSIDFFGALRARVYHD-----EVRKWVSEVGVDTIGKKLVNSKEGPPSF 383          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 3.740e-70
Identity = 144/212 (67.92%), Postives = 161/212 (75.94%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE*GEE--LDPGYWWWKPWPKTLWNPKEAPPKF 667
            ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAP        +      +       +G     N+  D+  V++VD+FPGQS DFFGALRA++YD+   +   D G    +   K L N +E PP+F
Sbjct:  167 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNV-PDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGV---ENIGKRLVNSREGPPEF 374          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 8.333e-70
Identity = 144/210 (68.57%), Postives = 158/210 (75.24%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE*GEELDPGYWWWKPWPKTLWNPKEAPPKF 667
            ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAP        +      +        G      +  +D  V+LVDTFPGQS DFFGALRA++YD+   +   G    +   + L N KE+PP F
Sbjct:  173 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFED-IVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGV-GVERIGRNLVNSKESPPTF 380          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.424e-69
Identity = 145/214 (67.76%), Postives = 158/214 (73.83%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE*GEELDPGYWWWK----PWPKTLWNPKEAPPKF 667
            ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAP        +      +       +G     N+  +D  V++VD FPGQS DFFGALRA++YD+     +   W  +       K L N KE PP F
Sbjct:  176 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEED-IVKVVDQFPGQSIDFFGALRARVYDD-----EVRKWVSEVGVDTIGKKLVNSKEGPPTF 383          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 3.501e-68
Identity = 144/210 (68.57%), Postives = 155/210 (73.81%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE*GEELDPGYWWWKPWPKTLWNPKEAPPKF 667
            ELVFAKM I+PIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAP        +      +        G     N+  +D  V+LVDTFPGQS DFFGALRA++YD+   +   G        K L N KE PP F
Sbjct:  176 ELVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKED-IVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGV-GVDSIGKKLVNSKEGPPTF 383          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 3.501e-68
Identity = 133/181 (73.48%), Postives = 146/181 (80.66%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE 580
            ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAP        +      +       +G     N+  D+  V++VDTFPGQS DFFGALRA++YD+
Sbjct:  166 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNV-SDESVVKIVDTFPGQSIDFFGALRARVYDD 345          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 258.455 bits (659), Expect = 4.572e-68
Identity = 142/216 (65.74%), Postives = 159/216 (73.61%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYL--PGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE*GEELDPGYWWWKPW----PKTLWNPKEAPPKF 667
            ELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAP        +      +       +G     G++   ++H VQLVDTFPGQS DFFGALRA++YD+     +   W  +       + L N KE PP F
Sbjct:  172 ELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVD---EEHVVQLVDTFPGQSIDFFGALRARVYDD-----EVRRWVSETGVENIARKLVNSKEGPPTF 379          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.330e-67
Identity = 144/210 (68.57%), Postives = 156/210 (74.29%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE*GEELDPGYWWWKPWPKTLWNPKEAPPKF 667
            ELVFAKMGINPIMMSAGELESGN GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAP        +      +       +G     N+  D+  V+LVDTFPGQS DFFGALRA++YD+   +   G    +   K L N +E PP F
Sbjct:  164 ELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNV-PDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKW-VGEIGVENISKRLVNSREGPPTF 370          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 5.055e-67
Identity = 141/210 (67.14%), Postives = 153/210 (72.86%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQGYLPGMNMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE*GEELDPGYWWWKPWPKTLWNPKEAPPKF 667
            ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAP        +      +       +G      +  +D   +LVDTFPGQS DFFGALRA++YD+   +   G        K L N KE PP F
Sbjct:  178 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEED-ITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVDATGKKLVNSKEGPPTF 385          
BLAST of EY665324 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 6.602e-67
Identity = 143/218 (65.60%), Postives = 155/218 (71.10%), Query Frame = 2
Query:   38 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPSHP*WSYGEILLGTYKGGPYWCVQ-----GYLPGM---NMWVDDHFVQLVDTFPGQSFDFFGALRAKIYDE*GEELDPGYWWWKPWPKTLWNPKEAPPKF 667
            ELV AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAP         ++        YW        G   G+   +   D+  V LVD FPGQS DFFGALRA++YD+   +        K   K L N +E PP F
Sbjct:  176 ELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAP---------LIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEK-IGKRLVNSREGPPVF 383          
The following BLAST results are available for this feature:
BLAST of EY665324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA1_LARTR9.843e-7168.69Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ3.740e-7067.92Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA8.333e-7068.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR2.424e-6967.76Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO3.501e-6868.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU3.501e-6873.48Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE4.572e-6865.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.330e-6768.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU5.055e-6767.14Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH6.602e-6765.60Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-F01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665324 ID=EY665324; Name=EY665324; organism=Citrus sinensis; type=EST; length=1002bp
CCACGCGTCCGAGGACAAGGAAAATCATTCCAACCCTGAGCTTGTTTTCG
CCAAGATGGGCATCAACCCAATTATGATGAGTGCCGGAGAATTGGAAAGT
GGCAATGCTGGAGAACCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGC
AGCTGACATTATCAGGAAGGGAAAAATGTGCTGCCTCATGATCAATGATC
TTGATGCAGGAGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAAC
AACCAAATGGTTAACGCCACACTCATGAACATTGCTGATAACCCAACTTG
TGTCCAACTCCCTGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAA
TCATAGTCACCGGTAATGACTTCTCAACATTGTATGCTCCCTCTCATCCG
TGATGGTCGTATGGAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTA
TTGGTGTGTGCAAGGGTATCTTCCAGGAATGAACATGTGGGTTGATGACC
ACTTTGTCCAGCTTGTTGACACCTTCCCCGGCCAATCCTTTGATTTCTTT
GGAGCCCTGAGGGCCAAAATCTATGATGAATAGGGGGAGGAATTGGATCC
CGGGTATTGGTGGTGGAAACCTTGGCCAAAAACCCTGTGGAACCCAAAGG
AAGCCCCCCCCAAATTTCCAACCACCCAGGGGGGAAAATGGGAAAAACCT
GGCCCCAGGACCGGAAAAAATATTTGGTCCAAAAACAAAAAAAAGGTGGA
AAAAAAAGTTTCATTTGGCCGTAAAAAGTTTTTTTAAAGGGAGGGGCCCC
CCTTCGGGGGGGAAACTAAAAGGGAAATAGCCTTTTTCTGAAAGGGGGGA
AATTTTTTTTAGTGGGGAACAAACACCCCCCCCGCCACAAAGAGAAAGGG
TTTCTCCTATTTTCTCGGCGAAAGGAGGGAGACTGTGCTGGAATTCCCCC
CCGGGCACGGCGACAAAAAACAAATATTTCTTTTATTTCCCCCCACACTC
GC
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